1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagttccttccattaaggtattcagactagtccttttttcaggtgtagattctcttactgggtctgtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAATGGAAGATGGAGGTACTGGTTGGAGAAATGGGTGGACACCCAAGTGGCCA
species | Vitis vinifera |
transcript | Vv13s0019g01830.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGTGATGAAGAGAGAGCGGATAAAGGAATACACATTTGGCCAAAGG GAGAGGAAAAGTGTCCATAAACCAGCACAATCGGAGCAGAACAAGCTGAATEST: gi|110417266|gb|EC983307.1|EC983307
genomic: AGGCTGTGATGAAGAGAGAGCGGATAAAGGAATACACATTTGGCCAAAGGgtaagagttc ... gtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAAT
EST: GGAATACACATTTGGCCAAAGG GAGAGGAAAAGTGTCCATAAACCAGCACAATCGGAGCAGAACAAGCTGAATEST: gi|34543816|gb|CF512048.1|CF512048
genomic: GGAATACACATTTGGCCAAAGGgtaagagttc ... gtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAAT
EST: AATACACATTTGGCCAAAGG GAGAGGAAAAGTGTCCATAAACCAGCACAATCGGAGCAGAACAAGCTGAATEST: gi|110389705|gb|EC954565.1|EC954565
genomic: AATACACATTTGGCCAAAGGgtaagagttc ... gtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAAT
EST: AGGCTGTGATGAAGAGAGAGCGGATAAAGGAATACACATTTGGCCAAAGG GAGAGGAAAAGTGTCCATAAACCAGCACAATCGGAGCAGAACAAGCTGAAT
genomic: AGGCTGTGATGAAGAGAGAGCGGATAAAGGAATACACATTTGGCCAAAGGgtaagagttc ... gtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAAT
ttcagactagtccttttttcaggtgtagattctcttactgggtctgtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAATGGAAGATGGAGGTACTGGTTGGAGAAATGGGTGGACACCCAAGTGGCCA
ctcttac putative branch site (score: 3)
ttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagttccttccattaaggtattcagactagtccttttttcaggtgtagattctcttactgggtctgtgttcatagGAGAGGAAAAGTATCCATAAACCAGCAGAATCGGAGCAGAACAAGCTGAATGGAAGATGGAGGTACTGGTTGGAGAAATGGGTGGACACCCAAGTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA