Sequence
atgc intronic sequence ATGC exonic sequencegtatagaacctttggtggattgatgtacatttaatcttttgacttgagatccacaaggttcttacatgcgctatgtttctttattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G04250.1 (Glycine max), 3'ss of exon 3
gta-tagaacctttggtgg--attgatgtacatttaatcttttgacttgagatccacaaggttcttacatgcgctatgtttctt-tattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
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gtaactaattctctgatattcatcattgtgcttgtcttgattgttcattacacttgatagtaacatgtttgctctgtataccttgtgaacagTAAAGTTTAGCATAAAGTCTATAAGGATACCAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAG
upper sequence: Vv13s0019g01670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G34050.1 (Glycine max), 3'ss of exon 4
gta-tagaacctttggtggattgatgtacatttaatctt--ttga-cttgagatccacaaggttcttacatgcgctatgtttctt-tattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
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gtaactaattccctgatattcattcattcggcttgtcttgattgttcattacacttgatagtaacatatttgctctgtataccttgtgaacagTAAAGTTTAGCATAAAGTCAATAAGGATTCCAGAGCTTTATATTGAGGTTCCTGAAACTTCAACTGTTGGTTCACTAAAG
upper sequence: Vv13s0019g01670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G12560.1 (Arabidopsis thaliana), 3'ss of exon 4
------------------------------------------------------------------------gtatagaacct--ttggtggattgatgtacatttaatcttttgacttgagatcc-acaaggtt-cttacatgcgctatgtttctttattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
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gtggttattgtagtctatctcaaaactcttcagttatcttatcttagctgttgtggtcctctcaaaaggctcccatggtacttgactggatggtaaatg-atactgagacatttatccggagacaggataatgtggttctcatgtatttttatctctggtgcagTAAAGCTAAGCATTAAGTCCTTTAGGATTCCAGAGCTTTTTATTGAAGTTCCAGAAACTGCAACAGTAGGATCACTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcttttgacttgagatccacaaggttcttacatgcgctatgtttctttattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
ttcttac putative branch site (score: 2)
tttctttattc putative PPT
tatgtttctttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatagaacctttggtggattgatgtacatttaatcttttgacttgagatccacaaggttcttacatgcgctatgtttctttattcagTGAAGTTTAGCATTAAGTCCTTCAGGGTACCGGAGCTTTTTATTGAGGTTCCTGAAACTGAAACTATTGGTGCATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG