Sequence
atgc intronic sequence ATGC exonic sequence...tttttgtttccattctttcacttcttttcaacactttccaaagctatgcatgttcacatgccgttgctttttcttcacatgccgttcttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G14670.1 (Glycine max), 3'ss of exon 5
tttttgtttccattctttcacttcttttcaacactttccaaagctatgcatgttcacatgccgttgctttttcttcacatgccgttcttttcttgct---------cagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
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-ttatgcctttatg-tgtaatatattgtca-----tttcaaacccattgacatacac-tgttatt-caatttgtttgtatgtaaatttttacttggtttcctcttacagGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCCATTCTTTTTTTCA
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G45030.1 (Glycine max), 3'ss of exon 5
tttttgtttccattctttcacttcttttcaacactttc-caaagctatgcatgttcacatgccgttgctttttcttcaca------tgccgttcttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
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-------taatatgtcatgtgcatatgcaaatactttcatatagacaatattgttaccatgttattcaattttttatgtgaagttttaacttggtttccttctatagGTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCAATTCTTGTGTATA
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 5
tttttgtttccattctttcacttcttttcaacactttc-caaagctatgcatgttcacatgccgttgctttttcttcacatgccgttc--------ttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
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---------atatgtcatgtgcgtatgcaaatactttcatatagaaaatattgttaccgtgttattctattttttatatgtgaagttttaacttggtttccttctatagGTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATA
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G41510.1 (Glycine max), 3'ss of exon 6
tttttgtttccattctttcacttcttttcaacactttccaaagctatgcatgttcacatgccgttgctttttcttcacatgccgttc--ttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
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-gcctttatgtaatatatattgtcatttcaaacccattgacatacacttcactttgtttgttgat-ttgtatgtaaatattttacttggttttctcttacagGTAATACATTACGATCTTCCCAATTCATCTGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCGATTCTTGTTTACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcatgttcacatgccgttgctttttcttcacatgccgttcttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
ctttttcttcacatgc CT-rich tract
tttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgtttccattctttcacttcttttcaacactttccaaagctatgcatgttcacatgccgttgctttttcttcacatgccgttcttttcttgctcagATAATACATTATGAGCTTCCCAATTCCTCAGAGATCTTTGTTCATCGGTCTGGACGAACAGGACGTGCAGGAAAGAAAGGAACTGCAATTCTCATTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -ccattct
- - - - - - - - - - - - - - caacact
- - - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcc