1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttttctggggtcttgtgattcagtgctgcaattattaaatgcaaaagtatagatttcatctttgttttcaatcataatgaaatgatactattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCTTGATGGCTTTTAAGGGTCATGTGCATCCTATTGATTCTTCATGGCATG
species | Vitis vinifera |
transcript | Vv12s0142g00340.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCEST: gi|351057434|gb|FQ454116.1|FQ454116
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
EST: CTTGGAGGAGGTCCAGCATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCEST: gi|351045925|gb|FQ441308.1|FQ441308
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
EST: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCEST: gi|351022143|gb|FQ438728.1|FQ438728
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
EST: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCEST: gi|352790288|gb|FQ481487.1|FQ481487
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
EST: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCEST: gi|352790808|gb|FQ478531.1|FQ478531
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
EST: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTT AACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
genomic: CTTGGAGGAGGTCCAACATCACAAAAGCTTACCATCGATGGCTTGAACTTgtgagtgaat ... tattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCC
aaagtatagatttcatctttgttttcaatcataatgaaatgatactattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCTTGATGGCTTTTAAGGGTCATGTGCATCCTATTGATTCTTCATGGCATG
ctatttt CT-rich tract
ataatgaaatgatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttctggggtcttgtgattcagtgctgcaattattaaatgcaaaagtatagatttcatctttgttttcaatcataatgaaatgatactattttgcagAACCTCAATTCTGGGTTGGGACTATGGTATCCAGGAGCACTTCCACCAGCCTTGATGGCTTTTAAGGGTCATGTGCATCCTATTGATTCTTCATGGCATG
- -tttctgg
- - - - - - - - - - - - - -ctgcaat
- - - - - - - - - - - - - - - - - - - - - - aaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa