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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttaatttaattccttttattgaagattatgtagatattgaatgttgagcaagcttagtccttatgcctaattcacttttccaactgtttgatattcattcttcagAACCAGTGGTCTACCGTGTTTTCCGGCATTGTTTCAAGAGCTATGACCCTGGAAGTACTATCAACTGGAGTTGCAGGGAACTATAACGGAGCCTTTCAAG

Basic information

species Vitis vinifera
transcript Vv12s0059g02310.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G10710.1 (Glycine max), 3'ss of exon 6
gtaggttttaatttaattccttttattgaagattatgtagatattgaatgttgagcaagcttagtccttatgcctaattcacttttccaactgtttgatattcattcttcagAACCAGTGGTCTACCGTGTTTTCCGGCATTGTTTCAAGAGCTATGACCCTGGAAGTACTATCAACTGGAGTTGCAGGGAACTATAACGGAGCCTTTCAAG
        |  | ||  |  || | |||   ||  |||     |  |||||     |     || ||||||  ||  |  |||||| ||  || ||  | |    |||||||||||| ||||| || ||||| || || || || |||||||| ||||| |||||||| |||||||| || || || |||||||| || || ||||| ||||
--------tgttatacattattat-ttgtctatgttgtgctcctgaaatgt--gttatttcaagcccttatttctc-tggacttttacatttgatttctttgttctcttcagAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTTCTATCAACAGGGGTGGCTGGGAACTACAATGGTGCCTTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttagtccttatgcctaattcacttttccaactgtttgatattcattcttcagAACCAGTGGTCTACCGTGTTTTCCGGCATTGTTTCAAGAGCTATGACCCTGGAAGTACTATCAACTGGAGTTGCAGGGAACTATAACGGAGCCTTTCAAG
                                           ttcattcttc  CT-rich tract
                                    tttgatatt  TA-rich tract