1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatctcaatgtatctgaaactctagaatgaatatcagaagaattttgtttacggcatctcattgcatttcccattaattttcttccctatgataaatcagGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGAGACTTTCTGAGACTGGAACACTTCAGAAGATCCATGAGAATTGGTTTT
species | Vitis vinifera |
transcript | Vv12s0059g02260.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTT GCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGEST: gi|56409215|gb|CX017467.1|CX017467
genomic: AGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTTgtaagtagct ... gataaatcagGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTG
EST: AGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTT GCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTG
genomic: AGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTTgtaagtagct ... gataaatcagGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTG
tgtttacggcatctcattgcatttcccattaattttcttccctatgataaatcagGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGAGACTTTCTGAGACTGGAACACTTCAGAAGATCCATGAGAATTGGTTTT
cattaat putative branch site (score: 3)
ttttcttccctatg CT-rich tract
attaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctcaatgtatctgaaactctagaatgaatatcagaagaattttgtttacggcatctcattgcatttcccattaattttcttccctatgataaatcagGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGAGACTTTCTGAGACTGGAACACTTCAGAAGATCCATGAGAATTGGTTTT
- -ctcaatg
- - - - - - -ctgaaac
- - - - - - - - - - - -agaatgaa
- - - - - - - - - - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca