Sequence
atgc intronic sequence ATGC exonic sequencegtacatcatcttctcaagttgaatacgacctggccagggagtaactctgagaggcttaaaacattccttccacctctatgaagtttacatgctcccatatgtaaacttacatgtgaagtatatttgctacctgtatttttggttggttttctactactgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G38510.1 (Glycine max), 3'ss of exon 7
gtacatcatcttctcaagttgaatacgacctggccagggagtaactctgagaggcttaaaacattccttccacctctatgaagtttacatgctcccatatgtaaacttacatgtgaagtatatttgctacctgtatttttggttggttttctactac--tgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
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------------------------------------------------------------------------------taaagcttcgagtgtattgcatatgg-ttcactctaagaatttaccttctatacatatatacatatgttttgattttacaataagcaacctcgtggtgcagGCTTGGACAGAAAGAGAAGGAGTCAGGAATCTTCTGAATATGGTGGGCAAGGAAGTAAGGATGGAAGGTTTTTTGCTGAATACACATTTCGATCGTTTTG
upper sequence: Vv12s0059g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G31960.1 (Glycine max), 3'ss of exon 5
gtacatcatcttctcaagttgaatacgacctggccagggagtaactctgagaggcttaaaacattccttccacctctatgaagtttacatgctcccatatgtaa---acttacatgtgaagtatatttgctacctgtatttttggttggttttctactactgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
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------------------------------------------------------------------------------taaagcttcgagtatattgcatatggttcactctaattaagaatttaccttcta--tacattacatgttttgattttacaataaacaaacctcgtggtgcagGCTTGGACAGAAAGAGAAGGCGTCAGGAATCTTTTGAATTTGGTGGGCAAGGAAGTAAGAATGGAAGGGTTTTTGCTGAAAACACATTTCAATCGTTTTG
upper sequence: Vv12s0059g00690.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G31970.1 (Glycine max), 3'ss of exon 5
gtacatcatcttctcaagttgaatacgacctggccagggagtaactctgagaggcttaaaacattccttccacctctatgaagtttacatgctcccatatgtaaacttacatgtgaagtatatttgctacctgtatttttggttggttttctactactgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
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----------------------------------------------------------------------gttttctttgtagctttaatggtagcttg-atggaatagcatcttgagtctatc-ataacttttggtttt---tcaattactaataatagtcaatg--ttggagcagGTTTGGACTGAAAGAGAAGGCGTGAGGAATCTTTTGAATATGGTGGGCAAGGAGGTGAGGATGGAGGGTTTTATGCTGGAATCGTATTGGCATCGTTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctacctgtatttttggttggttttctactactgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
tcatttt CT-rich tract
tgattaatcattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatcatcttctcaagttgaatacgacctggccagggagtaactctgagaggcttaaaacattccttccacctctatgaagtttacatgctcccatatgtaaacttacatgtgaagtatatttgctacctgtatttttggttggttttctactactgattaatcattttatgcagGTTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATTGTGGGAAAGGAAGTGAGAATTGAAGGGTATTTGATGGGTTCTCATATGGATCGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG