1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacatcatcttctcaagtttaatatgagctggtttgggagtaattctgagagggctaaaagcgtttcttccacctctatagcagtatttttggttggtttttttactatgattagtcatttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGGAAGTGAGAATGGAAGGGTATTTGGTGGGTTCATATCTGGATCGGTTTG
species | Vitis vinifera |
transcript | Vv12s0059g00670.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGEST: gi|77580431|gb|DV219098.1|DV219098
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGEST: gi|110372099|gb|EC936244.1|EC936244
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGEST: gi|110384509|gb|EC948950.1|EC948950
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGEST: gi|110360849|gb|EC924270.1|EC924270
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGEST: gi|71890634|gb|DT039689.1|DT039689
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
EST: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAG ATTTGGACAGAAAGAGAAGGGGTCAGGAATTTACTGAATATGGTGGGAAAG
genomic: ATCTCCATGCCCGCATACCAATCTGTGGAATGATATCTCAATATAATCAGgtacatcatc ... ttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAG
tctatagcagtatttttggttggtttttttactatgattagtcatttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGGAAGTGAGAATGGAAGGGTATTTGGTGGGTTCATATCTGGATCGGTTTG
tcattttt CT-rich tract
tttttttactatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcatcttctcaagtttaatatgagctggtttgggagtaattctgagagggctaaaagcgtttcttccacctctatagcagtatttttggttggtttttttactatgattagtcatttttatgcagATTTGGACAGAAAGAGAAGGGGTCAGGAATCTACTGAATATGGTGGGAAAGGAAGTGAGAATGGAAGGGTATTTGGTGGGTTCATATCTGGATCGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG