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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgggtcgacactgtcttgctgttgtgcatctccttgcttttggcagaccaaagtttgctaattattcttcttctgaattgtagCGTGAAGATTGGAGACAACGTCCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTG

Basic information

species Vitis vinifera
transcript Vv12s0059g00620.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G048819_T01 (Zea mays), 3'ss of exon 5
------------gtttgggtcgacact--gtcttgctgttgtgcatctccttgcttttggcagaccaaagtttgctaattattcttcttctgaattgtagCGTGAAGATTGGAGACAACGTCCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTG
              || | | || |||      | |   |||  ||  |     |    |    |||   |    |  ||  ||     ||  ||   ||||||||||||||||||  ||||| ||| |   ||||||| | || ||||| |  |||||||| ||||||||||| || ||||||||||||||     | |
ggcattcaaaccagtttgtttgaaacttaaaaattccaatgtcaattgcggaattgcctgatatccattctcattttgtttctccctaacttgatctcagCGTGAAGATTGGAGACTGCGTCCTCTGACTCCAGAAATGATCGAGTATGCACGCACTGATGCTCACTATCTGTTATACATTGCAAATTGTTTGGCATCAG

upper sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G46220.1 (Glycine max), 3'ss of exon 5
---------------gtttgggtcgacactgtcttgctgttgtgcatctccttgcttttggcagaccaaagtttgctaattattcttcttctgaattgtagCGTGAAGATTGGAGACAACGTCCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTG
                |  | | | |  || |  || |||  |     | |||    || |  |||   |  |      |  ||  | | || |||||||||||||||| ||||| || || || || |||| ||||||| || | ||||| |  || ||||||||||||||||||||||||||||| ||| | ||   ||
ctctttcatgtagtaataagagacaatgctattatgatgtgtttgggattcttttagttagt-gactggaactgatatttcttttatatgcttaattgtagCGTGAAGACTGGAGGCAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACGAACGGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATCAATG

upper sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G10530.1 (Glycine max), 3'ss of exon 8
---------------gtttgggtcgacactgtcttgctgttgtgcatctccttgcttttggcagaccaaagtttgctaattattcttcttctgaattgtagCGTGAAGATTGGAGACAACGTCCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTG
                |  | | | |  ||    || |||  |     | |||    || |  ||||  |  ||     |  ||  | | || |||||||||||||||| ||||| || || || || |||| ||||||| || | ||||| || || |||||||||||||| |||||||||||||| ||| | ||   ||
agtaaaatgttacaaataagagacaatgctactatgatgtgtttgggattcttttagttagt-gaccggaacttatatttcttttatatgcttaattgtagCGTGAAGACTGGAGGCAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACAAACAGATGCACACTATCTATTGTATATTGCAAACTGTCTGATCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccttgcttttggcagaccaaagtttgctaattattcttcttctgaattgtagCGTGAAGATTGGAGACAACGTCCACTGTCAGTAGAAATGCTAGAATATGCTCAGACTGATGCACACTATCTGTTGTATATTGCAAATTGTTTAATTGCTG
                           tgctaat  putative branch site (score: 2)
                                 ttattcttcttct  CT-rich tract
                              taattattcttctt  TA-rich tract