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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagttagcctgagagcattctattttcttctttaaatgcttggcatagcttttgtttagtggtttttagaaagtcacttcctccttttggtgtctgttaattttcattcattatattttacttttgtgcctgaaattgtaaaccaactgaaccctgacactgtcccaatttctgcagGAGCTTTTGACCAGGCATAAATCTACTGTTGCTGAATTTCTTTCCAAAAACTTTGACTGG

Basic information

species Vitis vinifera
transcript Vv12s0057g00410.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G47710.1 (Glycine max), 3'ss of exon 5
gttaagttagcctgagagcattctattttcttctttaaatgcttggcatagcttttgtttagtggtttttagaaagtcacttcctccttttggtgtctgttaattttcattcatta-tattttacttttgtgcctga------aattgtaaaccaactgaaccctgacactgtcccaatttctgcagGAGCTTTTGACCAGGCATAAATCTACTGTTGCTGAATTTCTTTCCAAAAACTTTGACTGG
                                                                                      | | |  |||   | || ||      | || ||||||||| ||    |  |      |  |  |||  ||    | ||   | ||| |   || |   |||||| | ||||| ||||| |||||||| ||||||||||||||||| ||||| | |||||||
--------------------------------------------------------------------------------------catatcttgttaataaagttctgggtactactattttactcttacagcaaattcattagcttgaaattaagctgatccattccctgact-gatgtacacagGAGTTGTTGACAAGGCACAAATCTACAGTTGCTGAATTTCTTTCTAAAAATTATGACTGG

upper sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G00940.1 (Glycine max), 3'ss of exon 5
gttaagttagcctgagagcattctattttcttctttaaatgcttggcatagcttttgtttagtggtttttagaaagtcacttcctccttttggtgtctgttaattttcattcattatattttacttttgtgcctgaaattgtaaaccaactgaaccctgacactgtcccaatttctgcagGAGCTTTTGACCAGGCATAAATCTACTGTTGCTGAATTTCTTTCCAAAAACTTTGACTGG
                                                                || || | | | | |  | ||      |||  ||  || ||| |     ||| |    | |  |  || |||||||  || | ||   |  ||    ||||     || |   |||||| | ||||| ||||| |||||||| ||||||||||||||||| ||||| | |||||||
---------------------------------------------------------------tgtgttgatataataaagttcta-----ggta-ctactattttgc---tgttacagcaaattcattagcatgaaatt--aagctaatccattccctg-actg-----atgtacacagGAGTTATTGACAAGGCACAAATCTACAGTTGCTGAATTTCTTTCTAAAAATTATGACTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgcctgaaattgtaaaccaactgaaccctgacactgtcccaatttctgcagGAGCTTTTGACCAGGCATAAATCTACTGTTGCTGAATTTCTTTCCAAAAACTTTGACTGG
                             ccctgac  putative branch site (score: 3)
                                              tttctgc  putative PPT
          aaattgtaaa  TA-rich tract