1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctgatttattattacaatgtggtgttctaaacatatcactttttggattcttttgcttgttgatgaagtatttttgtggatatattctgtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGACCGTTGTTATGCACTAACTGTGAGACATCCCTTGATGGTTGTTGGCACT
species | Vitis vinifera |
transcript | Vv12s0055g00900.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAA GTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAAEST: gi|30125531|gb|CB910870.1|CB910870
genomic: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAAgtaaacattc ... gtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAA
EST: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGTTGGGACAAGACTCTCAA GTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGAEST: gi|351043163|gb|FQ451336.1|FQ451336
genomic: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAAgtaaacattc ... gtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGA
EST: ATCCTAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAA GTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGAEST: gi|71859699|gb|DT008754.1|DT008754
genomic: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAAgtaaacattc ... gtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGA
EST: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAA GTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGC
genomic: ATCCCAGAGATGAACCTCTTAGCCACAGGAAGCTGGGACAAGACTCTTAAgtaaacattc ... gtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGC
tggattcttttgcttgttgatgaagtatttttgtggatatattctgtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGACCGTTGTTATGCACTAACTGTGAGACATCCCTTGATGGTTGTTGGCACT
tgttgat putative branch site (score: 4)
tattttc putative PPT
atatattctgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgatttattattacaatgtggtgttctaaacatatcactttttggattcttttgcttgttgatgaagtatttttgtggatatattctgtattttcagGTATTGGGATACAAGGCAGCCTAATCCTGTGCATACCCAGCAACTCCCTGACCGTTGTTATGCACTAACTGTGAGACATCCCTTGATGGTTGTTGGCACT
- - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgga