1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggctggctgctcgtatatttttgctgtcctttgtatctaagaaaatttctctcactttgatgaagcataccctttttttcgtgtatctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTCCCATGCTTTGGTGAGTGTGGGAAATCAAGGAAGACAGACAGCAGATTCA
species | Vitis vinifera |
transcript | Vv12s0035g01960.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG ATTAAACAACGGCCTCCTCTTCCATCACCCAAAGTTGGACGAGGACGATTCEST: gi|110361549|gb|EC925031.1|EC925031
genomic: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAGgtaggctggc ... tctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTC
EST: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG ATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTCEST: gi|30251196|gb|CB968929.1|CB968929
genomic: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAGgtaggctggc ... tctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTC
EST: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG ATTAAACAACGGCCTCCTCTTCCATCACCCAAAGTTGGACGAGGACGATTC
genomic: GCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAGgtaggctggc ... tctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTC
gaaaatttctctcactttgatgaagcataccctttttttcgtgtatctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTCCCATGCTTTGGTGAGTGTGGGAAATCAAGGAAGACAGACAGCAGATTCA
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctggctgctcgtatatttttgctgtcctttgtatctaagaaaatttctctcactttgatgaagcataccctttttttcgtgtatctgaaccagATTAAACAACGGCCTCCCCTTCCATCACCCAAAGTTGGACGAGGACGATTCCCATGCTTTGGTGAGTGTGGGAAATCAAGGAAGACAGACAGCAGATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT