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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC

Basic information

species Vitis vinifera
transcript Vv12s0035g01130.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G00470.4 (Glycine max), 3'ss of exon 4
-----------------gtaagat--tttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgtt--gttgctttc--ttgtggacaattagg---cttat-tatctcctgcctcttgtttt----tcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
                  ||| ||  ||    || |   || || || |  || |  | | ||  |    |   ||| | ||  |    |    || |  | |||||  || |   |||| |  | ||  ||  |   |||||  |  |  | ||  | |   ||||| |||   |    | || ||||    |  |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    | |||| |   |||||  ||||||| |    ||| ||||| |
gtgagtctattttcatcctaaaatcattggcattgcaaatgtttattgttgttgtagagtattcatactgtgtatctgactt-ctagaataagctgcttgt-actgct-attagcttatatatgcgagcttttagcccctttcaatcataaaaaaagaagaagcttatatatgctcattttattattttaatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC

upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G40330.1 (Glycine max), 3'ss of exon 5
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccata-aatgtataaaaa------caagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
                  ||  |||||  |||| |  | |||    ||     |  ||||||  ||| ||| | || ||||  | ||   ||   |  | || |||      |  ||  || |  | |||| |  |   | |   |  | || |  |     ||   | | ||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||    | |||| |   |||||  ||||||| |    ||| ||||| |
--------------gtgagtctattttcatcctaaaattattggcatt-gcaaatgcttatt-atttttgtagagtattcaa-attgtgtatgtgacttctagaaaaggctgcttgtactgctattatcttatatatgctcatattcttcatgttttattattttaatgttccagGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC

upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G28670.1 (Glycine max), 3'ss of exon 4
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
                                                                            ||  |  | | | | |  ||    |    || |  | ||| || |||      ||| | |  ||  | |    ||  | ||        |||| ||||||||| ||||||||||||||| |||| |||||||| ||||||||| |   | | | | |   ||||||  |||||  |||   ||||||||| |
----------------------------------------------------------------------------gtaaacta-tactcttccattctcatttccacgcatcgtttctgtctcc----caacttgatttgatttgatttgattttt--------cagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC

upper sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 4
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
                                                                        ||    |   |||| ||  |   | |       || |  | ||  || | |  |     |||  | ||||    |  |     ||| | || | ||| ||||||||| ||||||||||| ||| |||| |||||||| ||||||||||||  | | |  |    ||||||  |||||  |||   ||||||||| |
------------------------------------------------------------------------gtaaactgcacacttccattctcttttc-----cacgcatcgtctctgtttctt-----attttgtttatatattaatttgatttgatgtttc-agGCCCACATTGACCAGTGGATTGACTTTTCATCCTTGGAGATCGATGCTAATATTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055139|gb|FQ440478.1|FQ440478
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|161712238|gb|FC061612.1|FC061612
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110368464|gb|EC932441.1|EC932441
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|161719271|gb|FC068941.1|FC068941
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110727170|gb|EE103626.1|EE103626
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351042107|gb|FQ456317.1|FQ456317
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110727691|gb|EE104738.1|EE104738
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351017433|gb|FQ435786.1|FQ435786
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110381916|gb|EC937999.1|EC937999
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|37183980|gb|CF603334.1|CF603334
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|37183445|gb|CF602799.1|CF602799
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351028342|gb|FQ427238.1|FQ427238
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110374475|gb|EC939254.1|EC939254
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110381825|gb|EC935490.1|EC935490
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110699423|gb|EE076408.1|EE076408
EST:     CTCGATTGATGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|110392524|gb|EC958004.1|EC958004
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351025275|gb|FQ434288.1|FQ434288
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|71855580|gb|DT004635.1|DT004635
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|71859460|gb|DT008515.1|DT008515
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGACTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|71858356|gb|DT007411.1|DT007411
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGACTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|294965707|gb|GW839162.1|GW839162
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|34544508|gb|CF512740.1|CF512740
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351027331|gb|FQ444580.1|FQ444580
EST:     CTCGATTGAAGGCTGACAGCCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|161714380|gb|FC063221.1|FC063221
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|351016802|gb|FQ424229.1|FQ424229
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
EST: gi|352794288|gb|FQ479530.1|FQ479530
EST:     CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATAT                         GGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT
genomic: CTCGATTGAAGGCTGACAACCCCCTTTATGGCTCTTCTCCAATTGAATATgtaagatttt ... tttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
                        cttattatctcctgcc  CT-rich tract
                         ttattatct  TA-rich tract