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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttatcatatcattttcttgaagtcctctggaaacgtgttttaggaaatctagaattgatattaccttttattaaaaattttcattttgtcatttaattaatttaaatgcagGATATTGTGAGCATTTGCAAAAGGAGAGGTGGAAGCGATAACAAGAACCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCTGCACCTGATGTGATAT

Basic information

species Vitis vinifera
transcript Vv12s0035g01040.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01040.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G28780.1 (Glycine max), 3'ss of exon 5
gtatgtgttatcatatcattttcttgaagtcctctggaaacgtgttttaggaaatctagaattgatattaccttttattaaaaattttcattttgtcatttaattaatttaaat-gcagGATATTGTGAGCATTTGCAAAAGGAGAGGTGGAAGCGATAACAAGAACCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCTGCACCTGATGTGATAT
                            || | ||  |||  | |       |   ||   || |||||    | |||| | |||    ||||||   ||||| || |||  || |||||||||||| ||||||||||| ||||| ||||| || ||| |||  || ||||||||||||||||||||||||||||||||||| |  ||||||||||| |
----------------------------gtgcgcttaaaatatttaaccttgacaatatttttaatatt----tatatttacaatcgcaattttgc--tttaactattttttatagcagGATATTGTAAGCATTTGCAAGAGGAGGGGTGGGAGGGATGACAGAAATCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCAGAGCCTGATGTGATCT

upper sequence: Vv12s0035g01040.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G00440.1 (Glycine max), 3'ss of exon 3
gtatgtgttatcatatcattttcttgaagtcctctggaaacgtgt-tttaggaaatctagaattgatattaccttt--------tattaaaaattttcattttgtcatttaattaatttaaat-gcagGATATTGTGAGCATTTGCAAAAGGAGAGGTGGAAGCGATAACAAGAACCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCTGCACCTGATGTGATAT
                           | ||   |    | ||||  |||  | || ||   |||| | ||  |||        |||| | |||   || ||| || || ||||| |||  || |||||||||||| ||||||||||| ||||| ||||| || ||  |||  ||  |||||||||||||||||||||||||||||||||| |  ||||||||||| |
---------------------------attcacataaggaggtgtgcttaaaatatttaaccttgacaatatttttaatatttatatttacaatccgcagttt-tccttaaattattttttatagcagGATATTGTAAGCATTTGCAAGAGGAGGGGTGGGAGGGAGGACAGAAATATATCCCATAATGAGTGGTTGCAAACTGTTCAGTCAGAGCCTGATGTGATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattaccttttattaaaaattttcattttgtcatttaattaatttaaatgcagGATATTGTGAGCATTTGCAAAAGGAGAGGTGGAAGCGATAACAAGAACCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCTGCACCTGATGTGATAT
                                      aattaat  putative branch site (score: 3)
         ttttattaaaaatttt  TA-rich tract