1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtggtttgttaactttcatataaatcatatgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGAAGAACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCA
species | Vitis vinifera |
transcript | Vv12s0035g00280.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG ATTATTCATGTTAATCTTTCTCAAGAGAATCCAAAACCGATGGAAGCAGGAEST: gi|110728638|gb|EE104382.1|EE104382
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
EST: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG ATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGAEST: gi|110708664|gb|EE086465.1|EE086465
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
EST: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAG ATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
genomic: ACGTGCTTTTCACACATAAGAATATCAACATTACATACAACAAAAATCAGgtttgtggtt ... attcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGA
tgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGAAGAACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCA
gtctgac putative branch site (score: 3)
tttctattctt putative PPT
tttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggtttgttaactttcatataaatcatatgatgggtcttcttgggatcacgtctgacaatgctctaagtttctattcttacagATTATTCATGTTAATCTTTCTCAAGAGAACCCAAAACCGATGGAAGCAGGAAGAACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC