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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttttaggcagtgttcttgtttcattattatgatgtcttcctttgaaaataatacaaattaatttgtgccttgattgtctagATGGTTTACTACTATTCTGGTGGTCTTCGACTAAACCCAAACTTATATGATTGTGGGAAAGTTTGCCTCAGCCTTCTAAATACTTGGAATGGTAAAAAGA

Basic information

species Vitis vinifera
transcript Vv12s0028g03630.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885053|gb|DT034108.1|DT034108
EST:     TTTTTGTCTTTGATGTTCTCTTCCCTCCTAACTATCCTAGCGTACCACCG                         ATGGTTTACTACTATTCTGGTGGTCTTCGACTAAACCCAAACTTATATGAT
genomic: TTTTTGTCTTTGATGTTCTCTTCCCTCCTAACTATCCTAGCGTACCACCGgtatattttt ... gattgtctagATGGTTTACTACTATTCTGGTGGTCTTCGACTAAACCCAAACTTATATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgatgtcttcctttgaaaataatacaaattaatttgtgccttgattgtctagATGGTTTACTACTATTCTGGTGGTCTTCGACTAAACCCAAACTTATATGATTGTGGGAAAGTTTGCCTCAGCCTTCTAAATACTTGGAATGGTAAAAAGA
          ttcctttgaaaataat  TA-rich tract