1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagctatgtatgcatagaagtggaactgctgtgtttggtgcatcaattattgggaagtctttaaaagtgccttaatgtgcttagttttgtgtgagtgcagGCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTGGAAAAGATGATCTTCGTTGCTTGATTCCGTGTGCTATTGATCAG
species | Vitis vinifera |
transcript | Vv12s0028g03370.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAG GCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTEST: gi|110709548|gb|EE085106.1|EE085106
genomic: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAGgtatggttat ... gtgagtgcagGCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCT
EST: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAG GCAGTTCCATCCTTTTCGAATTTC-TTTCCACACCTCTTCTCTGGAAA-GAEST: gi|27581897|gb|CB004592.1|CB004592
genomic: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAGgtatggttat ... gtgagtgcagGCAGTTCCATCCTTTCCGAGTT-CATTTCCACACCTCTTCTCTGGAAAAGA
EST: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAG GCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTGGAAAAGAT
genomic: GTTTCACAGGGGAAGATCATATTGGGAAAGTGAGTTTCCCGCCTGTGCAGgtatggttat ... gtgagtgcagGCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTGGAAAAGAT
attattgggaagtctttaaaagtgccttaatgtgcttagttttgtgtgagtgcagGCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTGGAAAAGATGATCTTCGTTGCTTGATTCCGTGTGCTATTGATCAG
ccttaat putative branch site (score: 4)
tctttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctatgtatgcatagaagtggaactgctgtgtttggtgcatcaattattgggaagtctttaaaagtgccttaatgtgcttagttttgtgtgagtgcagGCAGTTCCATCCTTTCCGAGTTCATTTCCACACCTCTTCTCTGGAAAAGATGATCTTCGTTGCTTGATTCCGTGTGCTATTGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -gtatgca
- - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - -gcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttag