Sequence
atgc intronic sequence ATGC exonic sequencegtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G29520.1 (Glycine max), 3'ss of exon 5
gtaagggtcttagtttgaagttactggccttctttttaggttagcca-tacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA
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----------------gtaaatacttggccattatacaagttaggaagttcttttttcttggctgggggaggttaaggttgataacatcatgccatactgactgttaatcattt-ttttgcaaatttctccagCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGGAGTA
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
gtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA
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--------gtaaaatagtggccattatacttttttcttggttgggggag----gttaaggttgataacattatgccatactga-ctgtcatcatt-------------------ttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G51940.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAG--CGAAGAATTGAA
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---------------------------------------gtgag--agattgcattgagcttata--ttattctcttcactcacttgatctcttcttttcttgtga---cttacttatgattcctgaaacagTTTCGAGGAATGGGGAGTTGATGAACTGATCGTGGAAGACTCATGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGACAAATCGACAAATAC--
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G04630.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTG---GCAGCGAAGAATTGAA
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-----------------------------gtgagattgcattagttata-tcaat---acttttagctcttctttcaaatttgatatcttcttttct-tgcgacttacttatgactctgaa-------tcagTTACGAGGAATGGGGAGTTGATGAACTGATCGTCGAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAAAATCTGGCCTATGTGTTTTGCAAAGCT---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112229|gb|JG391697.1|JG391697EST: CGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAG TTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAG
genomic: CGTGAGAGGAAGATACCCTTCACCATTCGGCGCTACCTGCCTGATGGAAGgtaagggtct ... catgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA
ttttcttctatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA