1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcaatttacttttagattgtcttgtagcaaagctgtgaagagaagtttttgtgtctagtctggtagcaatttgctgagtcattttttctgttgaatacagACTGATAAAGTGCGACAGGAACATAGTGAAGACATGCCCATCCTAGATGCATTCAAAATTGTTTTTGAAAGGAGGCCAGATTTAAG
species | Vitis vinifera |
transcript | Vv12s0028g01120.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAATTAGTCCGAGAGATTGGTGTAGCATTTGAGAAAATTTTGGAAGAG ACTGATAAAGTGCGACAGGAACEST: gi|110698188|gb|EE075460.1|EE075460
genomic: AAGAATTAGTCCGAGAGATTGGTGTAGCATTTGAGAAAATTTTGGAAGAGgcaagtattg ... ttgaatacagACTGATAAAGTGCGACAGGAAC
EST: AAGAATTAGTCCGAGAGATCGGTGTAGCATTTGAGAAAATTTTGGAAGAG ACTGATAAAGTGCGACAGGAACATAGTGAAGACATGCCCATCCTAGATGCA
genomic: AAGAATTAGTCCGAGAGATTGGTGTAGCATTTGAGAAAATTTTGGAAGAGgcaagtattg ... ttgaatacagACTGATAAAGTGCGACAGGAACATAGTGAAGACATGCCCATCCTAGATGCA
tttttgtgtctagtctggtagcaatttgctgagtcattttttctgttgaatacagACTGATAAAGTGCGACAGGAACATAGTGAAGACATGCCCATCCTAGATGCATTCAAAATTGTTTTTGAAAGGAGGCCAGATTTAAG
tcattttttctgtt CT-rich tract
tcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatttacttttagattgtcttgtagcaaagctgtgaagagaagtttttgtgtctagtctggtagcaatttgctgagtcattttttctgttgaatacagACTGATAAAGTGCGACAGGAACATAGTGAAGACATGCCCATCCTAGATGCATTCAAAATTGTTTTTGAAAGGAGGCCAGATTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - -tgtcttg
- - - - - - - - - - - - - -caaagct
- - - - - - - - - - - - - - - - - - -aagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctga