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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctgattaatgctgtgttgcatttctggaatctgctttccttgagagccttttgccaactttaatttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATTCAAATGTCAAGCCCCTTGTAACCCTCTTCTTGTGCCCAAAACCGGTGGG

Basic information

species Vitis vinifera
transcript Vv11s0118g00800.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110357959|gb|EC921831.1|EC921831
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|351026924|gb|FQ436577.1|FQ436577
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAG--A-                         A-GTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|110403174|gb|EC964453.1|EC964453
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG--A-A---AG                         -AGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|351033382|gb|FQ446614.1|FQ446614
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|349832281|gb|FQ420842.1|FQ420842
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|349823669|gb|FQ415079.1|FQ415079
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATACAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|110358258|gb|EC922342.1|EC922342
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|351012554|gb|FQ430118.1|FQ430118
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|351023592|gb|FQ432975.1|FQ432975
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|351056126|gb|FQ453588.1|FQ453588
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAG--A-                         A-GTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
EST: gi|349830594|gb|FQ416892.1|FQ416892
EST:     ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCG-AA-A-G-AG                         AAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT
genomic: ACAGCAATCCTTCATCTTCTGCAGTTTTGAAGACCAAGCGAAAGAGGTAGgctgattaat ... tttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttctggaatctgctttccttgagagccttttgccaactttaatttggaaaagAAGTAATGCAGGTGAAATCAACAATGATCACTTTTTGTAAATGGACAAATTCAAATGTCAAGCCCCTTGTAACCCTCTTCTTGTGCCCAAAACCGGTGGG
                                       ctttaat  putative branch site (score: 4)
                                        tttaatttggaaaa  TA-rich tract