Sequence
atgc intronic sequence ATGC exonic sequence...cgctttcaataccatcaatcattacctatcaaaaaaagagagaattttcttaaatctatcattctacaagttatatgttctgataaatctgactcttcagGGAAATGCTAGGAGATTGCTAGACAAACGATGTGATGGGAACAGCCGCCTTGGACAACTTTCAAAATTAGGACTTGCACCGATTCTTTGGTGTATAATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 6
---cgctttcaataccatcaatcattacctatcaaaaaaagagagaattttcttaaat--ctatcattctacaagttatatgttctgataaatctgactcttcagGGAAATGCTAGGAGATTGCTAGACAAACGATGTGATGGGAACAGCCGCCTTGGACAACTTTCAAAATTAGGACTTGCACCGATTCTTTGGTGTATAATCT
| | || | | | | ||| | | ||| | | || | ||| | | | ||| | || || || | | | ||||||||||| | || ||||| |||||||| ||||| |||||||||||||||||| | |||| |||||||||||||| || | |||||||| |||||
gtacatctacatttctactatggcttattctttacaaat---gttagttacaatgaatggttgtggatttacta--tacattaatcaattatggatgcattgcagGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCTGTCCTTTGGTGCATAATTC
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 5
cgctttcaataccatcaatcattacctatcaaaaaaagagagaattttcttaaatctatcattctacaagttatatgttctgat-aaatctg---actcttcagGGAAATGCTAGGAGATTGCTAGACAAACGATGTGATGGGAACAGCCGCCTTGGACAACTTTCAAAATTAGGACTTGCACCGATTCTTTGGTGTATAATCT
| || | | || | ||| | | ||| | | | | ||| || || | | | ||| | || | || | || | | | |||||||||| | || ||||| |||||||| ||||| |||||||||||||||||| | |||| |||||||||||||| || | |||||||| |||||
----tacatttctattatgggttattctttataaatgttgctacatagttataatgaatggttgtggatttactatatactaaccaactatggataatgtgtagGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCCGTCCTTTGGTGCATAATTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttaaatctatcattctacaagttatatgttctgataaatctgactcttcagGGAAATGCTAGGAGATTGCTAGACAAACGATGTGATGGGAACAGCCGCCTTGGACAACTTTCAAAATTAGGACTTGCACCGATTCTTTGGTGTATAATCT
atctgac putative branch site (score: 3)
ctcttc CT-rich tract
taaatctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgctttcaataccatcaatcattacctatcaaaaaaagagagaattttcttaaatctatcattctacaagttatatgttctgataaatctgactcttcagGGAAATGCTAGGAGATTGCTAGACAAACGATGTGATGGGAACAGCCGCCTTGGACAACTTTCAAAATTAGGACTTGCACCGATTCTTTGGTGTATAATCT
- - - - - -ccatcaa
- - - - - - - - - -cattacc
- - - - - - - - - - - - - - - aaaaaaa