Sequence
atgc intronic sequence ATGC exonic sequencegtaaaacttatttaatttcaatcttctgtattttctaggaccattgtcactaaaataccattgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G34600.1 (Glycine max), 3'ss of exon 5
gtaaaacttatttaatttcaatcttctgtattttctaggaccattgtcactaaaataccattgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAA
| || | | | ||| | || || | | | | || | ||| | | | | | | ||| ||| || | | ||| | |||||||||| |||||||| || | || |||||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| || | ||||| |||||
---------gtacaactgc---ttgctgaacttgtta-------tattattcaagt----ttgaagtctgtgagtgacacatctttgtaa-cagcttttgttctcacatggcagATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAA
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G24660.1 (Glycine max), 3'ss of exon 5
gtaaaacttatttaatttcaatcttctgtattttctaggaccattgtcac-taaaataccattgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAA
| | | || | || ||| | | | | ||| | | | | | | ||| ||| | | | | ||| || |||||||||| |||||||| || | || |||||||| ||||| ||||| ||||||||||| || ||||| ||||||||||| || | ||||| |||||
-------------------------gtacaactgcttgctgcactgttatattattcaagtttgaagtctgtgagtgacacatctttgtaa-tagtttttgttctcacgtggcagATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAA
upper sequence: Vv11s0078g00440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G29960.2 (Glycine max), 3'ss of exon 1
gtaaaacttatttaatttcaatcttctgtattttctaggacca-ttgtcactaaaataccattgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAA---AACAGGGATTTATGAAGATAA
| | | || | || |||| | | | || | | | | | ||| ||| || | | ||| | ||||||||||| |||||||| || | || |||||||| ||||| ||||| ||||| ||||| || ||||| ||||| || ||| || || ||||| |||||
-------------------------gtacaactgcttgctgcacttgttatattattcaagtttgaagtccgtgagtgcacatctttgtaa-cagcttttgttctcacatgacagATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAAGCTTATAAAGCTGCAAAAAAAAAAAAAACTGGCATATATGATGATAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAA
ccctaaa putative branch site (score: 3)
atatatttcatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaacttatttaatttcaatcttctgtattttctaggaccattgtcactaaaataccattgtatttttggtattagttatcaccctaaattgccatatatttcatgtaacagATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA