Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgatcattttaaattgttcagcttttcaaatttggtatgtatttttatgtttataagatcttcattgtgatttttcatggtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG

Basic information

species Vitis vinifera
transcript Vv11s0065g00450.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87584845|gb|DY473849.1|DY473849
EST:     GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
EST: gi|294964296|gb|GW838099.1|GW838099
EST:     GACCAGATTGTCTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGG
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGG
EST: gi|33405732|gb|CF211359.1|CF211359
EST:     GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
EST: gi|351028718|gb|FQ433148.1|FQ433148
EST:     GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
EST: gi|22011495|gb|BQ796529.1|BQ796529
EST:     GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
EST: gi|110377829|gb|EC942921.1|EC942921
EST:     GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
EST: gi|161716363|gb|FC068095.1|FC068095
EST:     GACCAGATTGTTTTTCCTGATGTAGCAGTTTTTGAGAAG                         GTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT
genomic: GACCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAGAAGgtatctgatc ... gtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgtatttttatgtttataagatcttcattgtgatttttcatggtttatttagGTCAATCAAGCATCTGGAAGGATTTACATTTTAAAGTTCAACACCGACAATAGGAAGTTTTTCTTTTGGATGCAG
                                              tttattt  CT-rich tract
     tatttttatgtttata  TA-rich tract