1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgctatcataataatataaaaatgtgtagaatttgtaatggtttgaagccaccccaatacttagttatgagagaactgacctgataacttgtggaacagGTCACCCTTCACTAGAGGTAGAGCCTCACTAAGTAAATCTTATGGGGAGCTCTCAGTGCCAGAAACTGATATATCATTTGTAAGCTCAGGAAGGCCAAGC
species | Vitis vinifera |
transcript | Vv11s0065g00390.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
gaagccaccccaatacttagttatgagagaactgacctgataacttgtggaacagGTCACCCTTCACTAGAGGTAGAGCCTCACTAAGTAAATCTTATGGGGAGCTCTCAGTGCCAGAAACTGATATATCATTTGTAAGCTCAGGAAGGCCAAGC
tgataac putative branch site (score: 2)
aatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctatcataataatataaaaatgtgtagaatttgtaatggtttgaagccaccccaatacttagttatgagagaactgacctgataacttgtggaacagGTCACCCTTCACTAGAGGTAGAGCCTCACTAAGTAAATCTTATGGGGAGCTCTCAGTGCCAGAAACTGATATATCATTTGTAAGCTCAGGAAGGCCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
ctgctat
- - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgata