Sequence
atgc intronic sequence ATGC exonic sequence...caatgtttcaatttacctttcttttgggcataatttgtaagtttgcatcaagggcacaggatcatcagctgcttgtttggtttatgttttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 3'ss of exon 4
caatgtttcaatttacctttcttttgggcataatttg--taagtttgcatcaagggcacaggatcatcagctgct-tgtttggtttatgt-tttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
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--ctttgttaggcatggattctcttag--attatttgacttccttccttttaaagactaggcatgacacgtttctctacgccattaacatattcacctttttagGCCATACTGGAGATGCTACTTTCCAAATACCCAGGCTATCATTTATGTTGTCGATTCAAGTGATACAGATAGGCTTGTAACGGCAAAAGAAGAGTTTCAT
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 6
-caatgtttcaatt-tacctttcttttgggcataatttgtaagtttgcatcaagggcacaggatcatcagctgcttgtttggtttatgttttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
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tgaatatcagaactataaccattacttttgcatgat--gcattttttcatgaactaatacatttaattttccattaatatcattgtcatgtgtgcatttcagGCCATACTGGCGGTGCTACTTTCCAAACACCCAGGCTATCATATATGTTGTTGATTCAAGCGATACAGATAGGCTTGTAACAGCAAAAGAAGAATTCCAT
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------caatgtttcaatt-tacctttcttttgggcata---atttgtaagtttgcatcaagggcacaggatcatcagct-gcttgtttggtttatgttttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
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gtagcttaatgacctcgtttctcatttctagatatgatgaacatattgcatctactgtgaaggaatgaagaacagaaatgctccatcaagattatactgtttttgttttgcccaattttctaatggtatttttg-acagGCCATACTGGCGATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcaagggcacaggatcatcagctgcttgtttggtttatgttttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
tgtttttt CT-rich tract
tttatgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caatgtttcaatttacctttcttttgggcataatttgtaagtttgcatcaagggcacaggatcatcagctgcttgtttggtttatgttttttgggcacagGCCATATTGGAGATGCTATTTTCCAAATACTCAAGCCATAATATATGTTGTTGATTCAAGTGATACTGATAGATTGGTAATAGCTAAAGATGAGTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
caatgtt
- - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - gcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcagc