Sequence
atgc intronic sequence ATGC exonic sequence...tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G36560.1 (Glycine max), 3'ss of exon 4
tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT---
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--------gtaagtttttgttttattttgttttttttatgatgcttaattctgtcaaat-------ccctgccttat-tccacc-aatgattatttgcagATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACACATGCTGGCAGAAGGCTTGCAGTGACATTGGG---TGCAAAGAAAATTTCCTATATT
upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G08120.1 (Glycine max), 3'ss of exon 4
tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT---
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---------------gtaagtttctgttttattttgtttttttaatgatgcttaattctggtaaatccctgccttat-tccgcc-aatgattatttgcagATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGG---TGCAATAAAAATTTCCTATATT
upper sequence: Vv11s0037g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G23890.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------------tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT---
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gtaagttttgcttaattttggttgttgaattatgttagacttcccagcatttttttaagttacttttggagttaatacactttctaagtagttattatgctattacacttgctatctagctttatgatgcatcaactt--tgacaagaatttattttgcatccttttccgtc-aatgactctttgcagATAGTTGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGGCAATGGG---TACAATAAAAATTTCTTGTATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388758|gb|EC953541.1|EC953541EST: CTTGGGCTGGTGCTGCATATTATTTGCTTCTGTACATGCTTGCTAGTCAT ATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGC
genomic: CTTGGGCTGGTGCTGCATATTATTTGCTTCTGTACATGCTTGCTAGTCATgtaagtgcct ... atccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT
tccttgc CT-rich tract
atcaaaaaaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - -ccccttt
- - - - - - - - - - - - - - -aaatata
- - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg