1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcatatttatgattccctcgtcatttgatttacacacttattggtgctaatttttagtgctttatgcccttgtaatagcgtttgattttttccccccttaaattacacatgaattcagTGTTAAACATGAGTACGAAGGAAAATGGAAGGAGAACAACCGTTTATTAACATGTGATCCCCATGCAAAACGTGCCGTTACCAACTCTGATTCTCCTCAA
species | Vitis vinifera |
transcript | Vv11s0037g00210.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAAACTGACTCATCGAAGATAGTTGGATTTGNAGGT-AAACCATTCAG TGTTAA-CATGANTAC-AANGGAAAATGGAAGGAGA-CAACCGTTTATTAAEST: gi|161716766|gb|FC067205.1|FC067205
genomic: CAGAAACTGACTCATCGAGGATAGTTGGATTTG-AGGTTAAACCATTCAGgtcatattta ... atgaattcagTGTTAAACATGAGTACGAA-GGAAAATGGAAGGAGAACAACCGTTTATTAA
EST: CCAGAAACTGACTCATCGAGGATAGTTGGATTTGAGGTTAAAC-ATTCAG TGTTAAACATGAGTEST: gi|161708499|gb|FC056569.1|FC056569
genomic: CCAGAAACTGACTCATCGAGGATAGTTGGATTTGAGGTTAAACCATTCAGgtcatattta ... atgaattcagTGTTAAACATGAGT
EST: CCAGAAACTGACTCATCGAGGATAGTTGGATTTGAGGTTAAACCATTCAG TGTTAAACATGAGTACGAAGGAAAATGGAAGGAGAACA
genomic: CCAGAAACTGACTCATCGAGGATAGTTGGATTTGAGGTTAAACCATTCAGgtcatattta ... atgaattcagTGTTAAACATGAGTACGAAGGAAAATGGAAGGAGAACA
atgcccttgtaatagcgtttgattttttccccccttaaattacacatgaattcagTGTTAAACATGAGTACGAAGGAAAATGGAAGGAGAACAACCGTTTATTAACATGTGATCCCCATGCAAAACGTGCCGTTACCAACTCTGATTCTCCTCAA
gtttgat putative branch site (score: 5)
tttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatatttatgattccctcgtcatttgatttacacacttattggtgctaatttttagtgctttatgcccttgtaatagcgtttgattttttccccccttaaattacacatgaattcagTGTTAAACATGAGTACGAAGGAAAATGGAAGGAGAACAACCGTTTATTAACATGTGATCCCCATGCAAAACGTGCCGTTACCAACTCTGATTCTCCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC