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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG

Basic information

species Vitis vinifera
transcript Vv11s0037g00180.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os12g24650.1 (Oryza sativa), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                           | || | |    | |  | |||| ||  | |       ||  |  |  || |  |     ||  ||| || | ||             |  |  ||||| ||||| |||  ||| || || || |||||||||||||| ||||||||||||||||| ||| |||| || ||||| |||||||| || ||||||
---------------------------------------------------------gtacttcccttttcagtt-acttgtgtgagcaagcactggtttacttgttatggtgt-----atctactaataatttccc----------tgatcacagGTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G178958_T01 (Zea mays), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaacta-atccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                            ||  |    |   |||    | || ||  ||  || |  | ||| ||     | |  |  | |  || ||| |          ||||  || ||      |   |  |  ||||| || || || || || || ||||| |||||||| ||||| ||||||||||| ||||| ||| |||| || ||||| ||||| ||||||||||||
-------------------------------------------gtacttcatttttcacagccgcctagctgtatagatgtagaggttttacccatattagtttatctgttaaattt---------ctatgttttttt------ccccttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGACCTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G028114_T01 (Zea mays), 3'ss of exon 9
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                     |    || |||    |     | |  |||||     || |  |  | |    ||| | | | || |    | || |   || ||          |  |  ||||| || || || || || || ||||| |||||||| ||||| ||||||||||| ||||| ||| |||| || ||||| ||||| ||||||||||||
----------------------------------------------------gtacttcatttttcacagccgcctagctgtatag---atgtagaggttttacccaaattagtttatctgttaattctatgttttt-------cccttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGACCTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G388453_T01 (Zea mays), 3'ss of exon 8
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                     |    || |||    |   | | |  |||||     || |  |  | |    ||| | | | || |    | || |   || ||          |  |  ||||| || || || || || || ||||| |||||||| ||||| |||||||||||  |||| ||| |||| || ||||| ||||| ||||||||||||
----------------------------------------------------gtacttcatttttcacagccacctagctgtatag---atgtagaggttttacccaaattagtttatctgttaattctatgttttt-------cccttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G018558_T02 (Zea mays), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                     |    || |||    |   | | |  |||||     || |  |  | |    ||| | | | || |    | || |   || ||          |  |  ||||| || || ||  | || || ||||| |||||||| ||||| |||||||||||  |||| ||| |||| || ||||| ||||| ||||||||||||
----------------------------------------------------gtacttcatttttcacagccacctagctgtatag---atgtagaggttttacccaaattagtttatctgttaattctatgttttt------tcccttctcacagGTTCACTTTATAATCGCTGCCTGTGAAAATATGATCAGTGGCACAGGCATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G126913_T01 (Zea mays), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                     |    || |||    |     | |  |||||     || |  |  | |  | ||| | | | || |    | || |   || ||          |  |  ||||| || || || || || || ||||| |||||||| ||||| |||| ||||||  |||| ||| |||| || ||||| ||||| ||||||||||||
----------------------------------------------------gtacttcatttttcacagccgcctagctgtatag---atgtagaggttttaaccaaattagtttatctgttaattctatgttttt-------cccttctcacagGTTCACTTTATAGTCGCTGCCTGTGAAAATATGATCAGTGGCACAGACATGAGAACTGGTGACATTGTAACTGCTTCCAATGGGAAGACAATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G08150.1 (Glycine max), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                            ||| |||  | ||      |  | |   |     |||| |  | | ||||   |  |  || |||   ||   |||| || |    |   |||||   || |  || ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || |||
------------------------------------------gctaatttgtttagag-----ttctgatgga---gattgtgtagtgtctttt--gtggtgtagtaat--gataatgcatgcaatgcccag--attaaaaatcctacatgtgcagGTTCATTTTATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G22730.1 (Glycine max), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaa---tccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                       | | |  || || | ||    |    || ||  |||| | ||||  | |      |   |||  | | || |     |     ||||    | || || ||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || |||
-------------------------------------------------------gcatatgttgttgaataggattgtgcttatagcttctttgttcatctttttgcacaaaaaatgcatcttatatcccagt----ttaaaaaccctgcatgtgcagGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G36530.1 (Glycine max), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                       |   ||||| || |  | | |   || || || | |  |   || |   | |||  |||   |||| || |    |   |||||   || |  || ||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| || |||
---------------------------------------------------tggtggctaatttgtttag-agttctgatggatattgtgtagtatcttttgtggtaat--aataatgcatgcaatacccag--attaaaaatcctacatgtgcagGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G19350.1 (Glycine max), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagca-attgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                           ||||| || |  | | |   || |  || | |  |   || |   |   ||| |   ||    |  |      |  |||||   || |  || ||||||| ||||| ||||||||| | |||||||||||||||||||||||| | ||||||||||||||  |||||||| |||||||||||||||| || |||
--------------------------------------------------------gctaatttgtttag-agttctgatggagattgtgtagtgtcttttgtggtgtattaatgataatgcatgcaatgcccagattaaaaatcctacatgtgcagGTTCATTTTATTGTTGCAACCTGTGAGAATATGATAAGTGGAACAAGTATGAGGCCTGGAGATATTGTCACAACTTCAAATGGAAAGACTATAGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G30920.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgt-atgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                                         |   ||| | |        || |  ||||     || ||||| || | || ||  |||  |  ||         | |    |||||||| || ||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||  ||||||| ||||| |||||||| ||||||
------------------------------------------------------------------------gtaagtttatcacacggagcttgcgtttctgagttaaatgaatgtacc-taaacaaatgcttcgtt---------gcacaatcagGTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACTGGAATGAGACCTGGAGATGTCCTCACAGCCTCAAACGGAAAGACGATTGAG

upper sequence: Vv11s0037g00180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G30910.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                                                                                ||| |||       |    ||  ||    ||| |  ||   |      |||   | |     | ||| |     ||||||| || ||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||  ||||||| ||||| || ||||||||||||
--------------------------------------------------------------------------------gtaagtttatcacacggagcttgagtttctgagttaagtgaatgtacctgaacaaatgcttct-ttgcacaattagGTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGAGATGTCATCACAGCCTCAAACGGGAAGACAATTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110395105|gb|EC960661.1|EC960661
EST:     TTCTAGGTGCAGCAAAAGCCATTGTTCAAATTAAACTTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110387421|gb|EC952084.1|EC952084
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110703717|gb|EE080805.1|EE080805
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|351027495|gb|FQ444744.1|FQ444744
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110391662|gb|EC956652.1|EC956652
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110407927|gb|EC973545.1|EC973545
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|30253256|gb|CB970807.1|CB970807
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110719313|gb|EE097146.1|EE097146
EST:     TTCTCGGTGCAACAAAAACCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|71885860|gb|DT034915.1|DT034915
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110378787|gb|EC943935.1|EC943935
EST:     GCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: GCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|352782298|gb|FQ470200.1|FQ470200
EST:     AACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: AACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|349826195|gb|FQ416000.1|FQ416000
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|351024424|gb|FQ426233.1|FQ426233
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|71863824|gb|DT012879.1|DT012879
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGAT
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGAT
EST: gi|71884348|gb|DT033403.1|DT033403
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|352781590|gb|FQ468888.1|FQ468888
EST:     ATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: ATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110359619|gb|EC921397.1|EC921397
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110719195|gb|EE096892.1|EE096892
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110368156|gb|EC932124.1|EC932124
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110700000|gb|EE077540.1|EE077540
EST:     TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110373451|gb|EC937689.1|EC937689
EST:     CAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: CAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|352773813|gb|FQ472595.1|FQ472595
EST:     CTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
genomic: CTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG
EST: gi|110356896|gb|EC920053.1|EC920053
EST:     TTCTAGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAG                         GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGCGGAACAGGCATG
genomic: TTCTCGGTGCAGCAAAAGCCATTGGTCAAATTAAACCTTCTGGAGTGGAGgtaagccagt ... gtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG
                        ttatgacttattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaagccagttgttgttgttgttgttatcattgtttgtttgttttaacttgcatggaacaatttcttaactaatccatttgtatgttctattttcaattctccagcaattgaatctagcatacacttatgacttattaagggtcttgtatttgcagGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA