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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaattgttgcctcaactgcatttcaaatatagcttctgcataaagtctcataccttggtttggacttcagGTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAA

Basic information

species Vitis vinifera
transcript Vv11s0016g04420.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G12950.1 (Glycine max), 3'ss of exon 5
gtgagtaattgttgc----ctcaactgc-atttcaaatatagcttctgcataaagtctcatacct---tggtttggacttcagGTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAA
|| ||   ||||||      | |  |   ||||   ||  |  |     ||||| | ||  |||    |||  || | |  ||||||| ||||||||||||||||||||||||||||| |||||||||||||  || ||||| |||
gtaagcttttgttgtgctatttagttatgatttgttatgcacttatgctataaattttctcaccaatgtggcatgaattgtagGTTTATGCAAGCACATCTCGTGATAGCTTACTTGCAGCAGTTCGTGATGCTTTACAAACTGAA

upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G08040.1 (Glycine max), 3'ss of exon 5
gtgagtaattgttgcctcaactgcatttcaaatatagcttctgcataaagtctcatacct-tggtttggacttcagGTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAA
|| ||   ||||||    |  |   | | |  |||    | |  | |   |||||  | | |||  || | |  ||||||| |||||||| |||||||||||||||||||| |||||||||||||  || ||||| |||
gtaagattttgttgtgctatttagttataatttattatgttt-taaattttctcacgcatgtggcatgaattgtagGTTTATGCAAGCACGTCTCGTGATAGCTTACTTGCAGCAGTTCGTGATGCTTTACAAACTGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatttcaaatatagcttctgcataaagtctcataccttggtttggacttcagGTTTACGCAAGCACATCTCGTGATAGCTTACTTGCGGCAGTTCGTGATGTGTTGCAAACAGAA
     tttcaaatata  TA-rich tract