Sequence
atgc intronic sequence ATGC exonic sequence...cttgatttgcattagattttttcattccgacttctctgcctctcttattttcttcttcatttacaatttataatattgacggaacatgcttgactcacagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G31960.1 (Glycine max), 3'ss of exon 6
cttgatttgcattagattttttcattccgacttctctgcctc--tcttattttcttcttcatttacaatttataatattgacggaacatgcttgactc--acagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
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--ttgtgtgcactag-ttcactctttccaacca-taagccaaaatgacaacaaccaaattagtagcactctctctctgtctaattatgtgattgcttctgtcagAGCCATACCTGTTGGTGCTATTTCATATATGGACATTGATGGGTATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTC
upper sequence: Vv11s0016g04300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G09850.1 (Glycine max), 3'ss of exon 8
cttgatttgcattagattttttcattccgac---ttctctgcctc--tcttattttcttcttcatttacaatttataa-----tattgacggaacatgcttgactcacagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
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---------cactag-tttactctttccaacaaaccataagccaaaatgacaaaatctaaataagtagtattttctatctgtctatttctgttgattgctgctgttacagAGCCATACCTGTTGGTGCTATTTCATATTTGGACATTGATGGGCATAGATACAAGAGAGATGTTGAATTCTGTTATGATCTAAAACTTCCAAAAAGTTTC
upper sequence: Vv11s0016g04300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G08420.1 (Glycine max), 3'ss of exon 6
--cttgatttgcattagattttttcattccgacttctctgcctctcttattt--tcttcttcatttacaatttataatattgacggaacatgcttgactcacagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
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aactagatcactctttccaaccataagccaaaatgtcaaaattcatatatgtagtactcttttctttttctgtctaattctgttgattgatgctt---tcacaGCGCCATACCGGTTGGTGCTGTTTCATACAAGGACATTGATGGATATAGATACAAGAGAGATGTTCTGTTCTGTTATGATCTAAAACTTCCAAAAGATTT- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttcttcttcatttacaatttataatattgacggaacatgcttgactcacagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
tcttcttcatttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgatttgcattagattttttcattccgacttctctgcctctcttattttcttcttcatttacaatttataatattgacggaacatgcttgactcacagAGCTGTACCAGTTGGTGCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - -tcattcc
- - - - - - - - - - - - - - - - -ctctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct