1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atcacttaagatcagttgttagtgcactttctttttctctttttaagaggaattttatgtgggtattgctctaagatgtaaaagaaatcttcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGGAACTGGAATGGGTGTGGGCCCCCCTGTAGCTTCTCTCTATGTGACAGAG
species | Vitis vinifera |
transcript | Vv11s0016g03660.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAG TGCAACAACCAAAAGCTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGGEST: gi|110723682|gb|EE101272.1|EE101272
genomic: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAGgtatatatat ... tcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGG
EST: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAG TGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGGEST: gi|71881826|gb|DT030881.1|DT030881
genomic: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAGgtatatatat ... tcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGG
EST: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAG TGCAACAACCAAAAGCTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGG
genomic: AGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAGgtatatatat ... tcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGG
agaggaattttatgtgggtattgctctaagatgtaaaagaaatcttcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGGAACTGGAATGGGTGTGGGCCCCCCTGTAGCTTCTCTCTATGTGACAGAG
tcttcattttc CT-rich tract
aattttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcacttaagatcagttgttagtgcactttctttttctctttttaagaggaattttatgtgggtattgctctaagatgtaaaagaaatcttcattttcagTGCAACAACCAAAAGTTTGGAAGGTATGCTCATAGGAAGGTTTCTAGTTGGAACTGGAATGGGTGTGGGCCCCCCTGTAGCTTCTCTCTATGTGACAGAG
- - - - - - - - - - - - - - - - - - - - - - aagagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa