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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggttagattaaattatgtttatggcaatttttggctctagtttttgctccaattttgaatgcttcaaattcttatagtctcatgcatgctatacattgcagaatttgaagtatgacaataaatttctcgtttcttattcagCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGC

Basic information

species Vitis vinifera
transcript Vv11s0016g02970.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G56580.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtggttagattaaattatgtttatggcaatttttggctctagtttttgctccaattttgaatgcttcaaattcttatagtctcatgcatgctatacattgcagaatttgaagtatgacaataaatttctcgtttcttattcagCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGC
                                      |     |    || |   |||  |  |   | ||||||  |  |   |  || ||  |||||||  || |||       |||||  |    |  |  ||   |   ||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||| |||| |||  ||   | |||||||| || |||   ||||||||| |  
--------------------------------------gtacgaaagcattccaaaaatcatctacattacaaatttcttgatgtttctgtattgtatacat-acataatc------atgac--ttgtctcttttttcacttcacagCCTGAGAGGATTAGTGGAAGCACATATGACTACAGCAGTGACATTTGGAGTTTGGGGATGTCAGTGTTAGAATGTGCAATAGGAAGATTTCCTTATTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctatacattgcagaatttgaagtatgacaataaatttctcgtttcttattcagCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGC
                                    tttctcgtttcttatt  CT-rich tract
                        tatgacaataaattt  TA-rich tract