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gtgtgtataataaatgttctgtttaaaaatattctttgttcaatgtgcattaccaattaataactgttatttctttcttatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGAAGGAAGCAATGACTTTGACAGTTCTTCAG
species | Vitis vinifera |
transcript | Vv11s0016g02870.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAAATCTGTGTATGTTGGAGGTGATTATCGCTGTCAAGCTGACTCAGGG AAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGEST: gi|110716318|gb|EE091196.1|EE091196
genomic: CTAAATCTGTGTATGTTGGAGGTGATTATCGCTGTCAAGCTGACTCAGGGgtgtgtataa ... tatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
EST: AGCTGACTCAGGG AAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGEST: gi|110382252|gb|EC938898.1|EC938898
genomic: AGCTGACTCAGGGgtgtgtataa ... tatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
EST: CTGACTCAGGG AAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGEST: gi|22014250|gb|BQ799284.1|BQ799284
genomic: CTGACTCAGGGgtgtgtataa ... tatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
EST: CGCTGTCAAGCTGACTCAGGG AAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGEST: gi|32268962|gb|CD718121.1|CD718121
genomic: CGCTGTCAAGCTGACTCAGGGgtgtgtataa ... tatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
EST: CTAAATCTGTGTATGTTGGAGGTGATTATCGCTGTCAAGCTGACTCAGGG AAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
genomic: CTAAATCTGTGTATGTTGGAGGTGATTATCGCTGTCAAGCTGACTCAGGGgtgtgtataa ... tatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAG
ctttgttcaatgtgcattaccaattaataactgttatttctttcttatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGAAGGAAGCAATGACTTTGACAGTTCTTCAG
taataac putative branch site (score: 1)
ctgttatttctttctt CT-rich tract
aattaataactgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtataataaatgttctgtttaaaaatattctttgttcaatgtgcattaccaattaataactgttatttctttcttatatgccagAAAACACATTTTGCTCTGGCCTTTGAAGTTCCCGGTGGTTGGCATAAGGAGAAGGAAGCAATGACTTTGACAGTTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA