Sequence
atgc intronic sequence ATGC exonic sequence...ccatgtaacttgacctgttgtaatgcattctcctttgttaaagatacgaaaaaaagtggtagaacatgatttatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 5
--------ccatgtaacttgacctgttgtaatgcattctcctttgttaaagatacgaaaaaaagtggtagaacatgatttatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
|||| | ||| |||| | || || | | | | | | | | || | |||| | |||| || |||||||||||||||| ||| || | ||||||||||| | ||||| || ||||||||||||||||||||||||| || | |||||||||||| ||||| ||||||
tacagtaaagatgtctgcttgttggttataataggtaactgttcattt----cattgatatcaatagcaaag-ataacttatgaatc---tggtacttttctgtgcagGTGTGATTCTGCTTTTGTATCTGGTGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGA
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 5
ccatgtaacttgacctgttgtaatgca-ttctcctttgttaaagatacgaaaaaaagtggtagaacatgatt-tatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
|| ||| | | || || || | | || ||| || | | | | | || || | | ||||| | || | | |||||||||||||| ||| |||| || ||||| || ||||||| |||||||| |||| |||||||||||||| |||| |||||||||||| ||||| ||||||
tgctgagggatgaaata--attatacagttgtgcattcttagtcatttcatagataaggatatcccagaaagatgattactgacttgtaacattctttgcagGTGTGATTCTGCTTTTCTATCAGGTGTTACGTTAATGCTATTTGCTTGTGTTGTATGGTTAAAATTGGTGTCTTATGCACATACAAACTATGATATGAGA
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 5
----ccatgtaacttgacc-tgttgtaatgcattctcctttgttaaagatacgaaaaaaagtggtagaacatgatttatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
| ||| | | | || ||| |||| | || | | | | | | | | |||||| | | || ||| | |||||||||||||| ||| || | || |||||||| ||||||| ||| |||| |||| |||||||||||||| |||| |||||||||||| ||||| ||||||
gctgcgggataaagtaattatacagttgtgcgttcttagtcatttcatagataaggatatcccagaaag-atgattactaacttgtagcattcc----tttgcagGTGTGATTCTGCTTTTGTATCAGGTGTCACGTTAATGCTGTTTTCTTGTGTTGTATGGTTAAAATTGGTGTCTTATGCACATACAAACTATGATATGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgaaaaaaagtggtagaacatgatttatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
ttctaaa putative branch site (score: 2)
aacatgatttatttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccatgtaacttgacctgttgtaatgcattctcctttgttaaagatacgaaaaaaagtggtagaacatgatttatttactatatggttctaaattgtgcagGTGTGATTCAGCTGTTCTCTCTGGTGTCACACTAATGCTCTTTGCTTGCATTGTGTGGTTAAAATTGGTATCTTTTGCACATACAAATTATGACATGAGA
ccatgta
- - - - - - -cctgttg
- - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacatg