Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

Basic information

species Vitis vinifera
transcript Vv11s0016g01380.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgct-taccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
                                          |||   |     || |  | || | |   | |  |||||| |  | |  |   |  |      |  |  | ||      |||||    |    |||||||| || ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| || |  || ||| | || |||||||| ||||||||  | |
------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaattt--ttttcttagaagctgcttcttgtttt-cagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
                                      ||| ||        |||    ||    |   | || |       || |   || ||  ||         | ||  ||| | |  |||| | |||    |||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| || |  | |||| | |||||| | || || || |||   |
-------------------------------------gtttggtgcttggtatcagatgttatctta--ttatgcaaacatataacaaaatagctgtta-------gtaatactctagttgacttggcttca----gGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G33230.1 (Glycine max), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttcttt--ttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgcc-atcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
|||||||||  |  | ||  | |  || |  |  ||||||      ||  ||  |||  ||||    ||| ||||     |   ||  || ||| |||   ||    | |  || |    | |  || ||  ||  ||||||||| |||||||||||||| ||||||||||||||||||||||| || || || || || || ||||| || || |||||||||||||| ||||||||||
gtttgcttctatttctcatattacatgatagtttttctttcgccactaggattttcatgcatt----tggctcat-----tttctatttttatttcaac-atggaaagttggtgctaatcactattttcctgtcttacagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACAATCCACACTC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 5
----------gtttgcttcactcacccagttgatctgttcatgcttctttttg--ttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctg-atcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
           |||  ||     ||  ||   | ||| |     ||||||  |   ||  ||  |||    |||   ||| ||||    || ||||  |  ||||   |||     || |  | | | |   ||  |     ||  | ||||||| |||||||||||||| ||||||||||||||||||||||| || || || || || || ||||| || || |||||||||||||| ||||||||||
gtttgttttttttttttttttctacatagcc-acctgattgattttctttcagcactaggattttca--tgttgt--tggctcattttttttcttaa-tggattgatgttgctaaatgcaaaaagattt---ttcttcattgtcctatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACTC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G33240.1 (Glycine max), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatc----aaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
||||| ||   |   |    |  |    | |||    || || ||| ||  ||      ||   || |||    |  || |||  |||||| |       || || |     |  | |||| ||| |  ||    | | ||||||| |||||||||||||| ||||||||||||||||||||||| || || || || || || ||||| || || |||||||||||||| |||||||| |
gtttgattttttattcttcatagttaactgatggaatttctt-ttagca--ctaggattttcatgttgttggctcattttctt-tcttcatggattgatggtgctaaatgc-taattgattccttactgtcttatatatagGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTTCCTGATCTTGTCACGATCCACACCC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgtta-acatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
                          |||  ||||||| ||  ||  | || ||  |   |     |   |  |  ||||| | |  ||     | ||   ||  ||||  |  |    |||  ||||   |  | ||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || || || || ||||| || ||||||||||||||||| |||||  |||
--------------------------gtttttgcttctattctttgtagattcttgatactatttatctcttttg-ggttgttgatttt----actatgaagtgatgatgctaattgttattttttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G26890.1 (Glycine max), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
                       | | || ||  |   || | |  | || ||  |  | |    |   || |  || |  ||   || | |   |     |  || | || |  |   ||| ||||   |  | ||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || || || || ||||| || ||||||||||||||||| |||||  |||
----------------------gtttttttatcttctattctttgtagattcttgat-actatt-tatctcttttgggttgttgattttactatgaaaagatgatgctaat-tggtattttg-ttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
  ||  ||  ||       || ||   ||| || | || ||| |   |||  |      |||   || |||||   |||  ||||  | |  |  ||  ||  || ||  |  | | |     ||||   |  | ||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || || || || ||||| || ||||||||||||||||| |||||  |||
-gttattttgcttctattcttcatacattcttgatactatttat---catttttgg--gttgt--tgattcattttgtt--ttacgatgaa-gagatgatg--ctaattgttattttg-----ttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
                                        || || |||     ||||  |    ||  ||| |        |||||  | ||  ||  |||  | | |    ||||| ||  |  |       |||||||| |||||| ||||||| |||||||||||||| ||||| |||||||| || ||||| || |  || ||  | |||||| |||| | |||||| || |
-----------------------------------gtcagttcttcacagtggaaacctgtttcttgaatcacat-----tctacct--agtgagatcttgtg-taacctgaatctgg-ttaatcaca--tgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------gtttgct-tcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
               || ||  |  |||    |  |||  | |||  |||  |   |  ||        | | | |   ||  |     |  ||   ||      |     |   ||  |||   ||    | |    ||||  ||    |||| ||  | ||||||||||||||||||||||| || |||||||||||||| |||||||| || |  || || || || ||| | ||||||||||| |  |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
gtttgctt--cactcacccagt--tgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaa--cagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
|||||     ||   |  ||||  ||  || |   || | ||  ||| | |  ||  | ||  |    ||  |  | |      ||    | ||    | |||| |       || ||    ||   | |  ||      ||||||||| | |||||||| || ||||||||||| || ||||| || ||||| |||||||| ||||  || ||||| || ||| | ||||||||||| |  |
gtttgtcgagcagctattcagtggtgtcctctctgtggt-ctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgca----agttgtctgtaatgtatcttagaaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
----------gtttgcttcactcaccca-gttgatctgttcatgctt----ctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtc-ctgatcatgtt----ctggattg----cttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
           |||  || |  | || | ||| |    | | ||        |  |  |  |     || | | ||||  |     | |  |||   ||  |    |   ||| |  |  ||    |  |    ||| ||||      | || ||   ||||| ||  | ||||||||||||||||||||||| || ||||||||||| || || ||||| ||||  || || ||||| ||| | || ||||||||||  |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
|| || |  |    |  |||   | || || |     ||||   | ||      |    | |   | |||  | |   |   |||||         |  || | || | |  || |  ||| ||   | |    ||||| ||  | || |||||||| ||||||||||| || ||||| || ||||| |||||||||||||  || ||||| || ||| | || || ||||| |  |
gtatg-tggatcttcatagtgtttttggtctt--caattttctctgacgatgctagatttcgtcatcgtttttgct-ctatatacctaatccagtgtattgacgtg-ttacttttttaattactgttctt--ggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC
   | |   |    |    |   || ||   |   || ||||     | | ||  |  |      || || ||| |   |  | ||   | || |  ||           |  | |||  || ||        |||||| || || || || ||||| ||||||||||| || |||||||| ||||| |||||||| ||||  || || || || ||| | || || || ||||  |
--gtacacaagatgcttgat--gtccgtcagtagctccttttt----cgtactaga--aagatattgattgata-gtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgttt--------acagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402276|gb|CF207903.1|CF207903
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCGCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|351015000|gb|FQ444289.1|FQ444289
EST:     CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110715060|gb|EE092677.1|EE092677
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|26263028|gb|CA814091.1|CA814091
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|26261974|gb|CA813037.1|CA813037
EST:     CAGTCAAGGAATATATNGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATC
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATC
EST: gi|349832316|gb|FQ420877.1|FQ420877
EST:     CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|351043060|gb|FQ443902.1|FQ443902
EST:     CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110423917|gb|EC990270.1|EC990270
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTTTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110712407|gb|EE089992.1|EE089992
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAAGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|18459584|gb|BM437862.1|BM437862
EST:     CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|26267581|gb|CA818644.1|CA818644
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|351025652|gb|FQ426666.1|FQ426666
EST:     CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|34546837|gb|CF515069.1|CF515069
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|33402357|gb|CF207984.1|CF207984
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCGCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110389857|gb|EC954729.1|EC954729
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|34546658|gb|CF514890.1|CF514890
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|33402921|gb|CF208548.1|CF208548
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110684969|gb|EE062852.1|EE062852
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110687640|gb|EE065280.1|EE065280
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|34319185|gb|CF371939.1|CF371939
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110360898|gb|EC924341.1|EC924341
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110425974|gb|EC992370.1|EC992370
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTCTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
EST: gi|110388507|gb|EC953265.1|EC953265
EST:     CAGTCAAGGAATATATTGACTCGGCTGTGAGACATGTGCTTTTAAGACAG                         GGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA
genomic: CAGTCAAGGAATATATTGACTCAGCTGTGAGACATGTGCTTCTAAGACAGgtttgcttca ... catcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG