Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagtactgtacccagttttggactaggataatttaaaaagccactgtcaacattatttatgttctcattgctcctagtttatgtgccttacataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCATGTGCTGTCCTTG

Basic information

species Vitis vinifera
transcript Vv11s0016g00900.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 5
gtgcagtactgtacccagttttggactaggataatttaaaaagccactgtcaacattatttatgttctcattgctcctagtttatgtgccttacataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCATGTGCTGTCCTTG
          || |  |  |||  | ||  |  ||| |   |    || |     | |||||| |  | |||     ||    ||    |||  | ||||||||| ||||| ||  | || ||||||||||| || |||||||||||||||||||| ||||| || |
----------gtgcgta--tttaaagtataactattcactga----cttttgtactgatttatatgat-attaactgtaacacata---cttttacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCACTGCTTTCAACTTTCCATGCGCTGTTCTAG

upper sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G08150.2 (Glycine max), 3'ss of exon 4
gtgcagtactgtacccagttttggactaggataatttaaaaagccactgtcaacattatttatgttctcattgctcctagtttatgtgccttacataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCATGTGCTGTCCTTG
          || |  |  |||| | ||  || ||| |   |    || |     | |||||| |  | |||     ||    |||   |||  | ||||||||| ||||| ||  | || ||||||||||| || | |||||||||||||||||| ||||| || |
----------gtgcgta--tttgaagtataattattcactga----cttttgtactgatttatatgat-attaactgtaacccatg---cttttacaccacagGTATGGAACCCACTAGGAATAGTTGGTGTAATCAGTGCTTTCAACTTTCCATGCGCTGTTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128999|gb|CB914338.1|CB914338
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAG
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAG
EST: gi|30129010|gb|CB914349.1|CB914349
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCC
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCC
EST: gi|110701993|gb|EE080197.1|EE080197
EST:     ACGTCCCGACCATATGATGTGTGAA                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
EST: gi|110725486|gb|EE102039.1|EE102039
EST:     ACGTCCCGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA
EST: gi|161711973|gb|FC060028.1|FC060028
EST:     ACGTCCAGACCATATGATGTGTGAG                         GTGTGGAATCCCATGGGCATAGTTGGTGTGATGACTGCTTTCAACTTTCCA
genomic: ACGTCCAGACCATATGATGTGTGAGgtgcagtact ... cataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaacattatttatgttctcattgctcctagtttatgtgccttacataccacagGTGTGGAATCCCATGGGCATAGTTGGTGTGATTACTGCTTTCAACTTTCCATGTGCTGTCCTTG
                                       gccttac  putative branch site (score: 3)
      attatttatgttct  TA-rich tract