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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatattttgatcattttcttccactatttgtttttagttccacattcctgtttcccttttaggagccttctgtgatgtccttattgctgcttatctgcattacaaattttcggataatttcttcaccctttgttgcttacatcctctatttggttgtttgaattagTCGGTTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTTTTTCACTCTGCCAATATTGTGTCAAG

Basic information

species Vitis vinifera
transcript Vv10s0523g00030.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0523g00030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 6
gtatatatattttgatcattttcttccactatttgtttttagttccacattcctgtttcccttttaggagccttctgtgatgtccttattgctgcttatctgcattacaaattttcggataatttcttcaccctttgttg-cttacatcctctatttggttgtttgaattagTCGGTTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTTTTTCACTCTGCCAATATTGTGTCAAG
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-------------------------------------------------------------------------------gtgtggttatctcctgttgcgag-ataatatgctttgttgtctttgttccattctcactgggctcatcttgtttgttgtcatgtttactccagTCGTCTACGTGTCATTGCGGAACTAAGACATGGAGACTTGTTTCACTCTGCCAATATTGTGTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataatttcttcaccctttgttgcttacatcctctatttggttgtttgaattagTCGGTTGAGAGTCATTGCTGAACTTAGGCATGGGGATCTTTTTCACTCTGCCAATATTGTGTCAAG
                      tgcttac  putative branch site (score: 2)
                                             tttgaatta  TA-rich tract