Sequence
atgc intronic sequence ATGC exonic sequence...atgcctttggttggtgatttaactcttatggtctacttgattgctcacttttgcctttcctttactggaatgatttttattgatactgttgtttgaccagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G39030.1 (Glycine max), 3'ss of exon 7
atgcctttggttggtgatttaactcttatggtctacttgatt-gctcacttttgcctttcctttactggaatgatttttattgatactgt---tgtttgaccagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT
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----taatatctaattatccagcattgcttgcttctgaggtttgttaatatttaataatattaatctatatttgttcatattgtttttgcatgttcttgagcagAGCCCAGGCAAAGCTTGTATATGCTTGTGAGTGGAATCCCCATGCTGTAGAAGCACTCCAACATAATCTAGAAGCAAATTCTGTGGCTGACCGTTGTATC
upper sequence: Vv10s0116g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G01710.1 (Glycine max), 3'ss of exon 6
atgcctttggttggtgatttaactcttatggtctacttgattgctcacttttgcctttcctttactggaatgatttttattgatactgttgtttgaccagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT------------------------------------
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--------------------------------------------------------------------------------------------------------------------gtatatgcttgtgagtgaaatccccatgctgtagaagCACTCCAACATAATCTACAAACAAATTTTGTGGCTGATCGTTGTATCATACTTGAAGTAGATAATCGAATTACAGCTCCCAAG
upper sequence: Vv10s0116g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G04670.1 (Arabidopsis thaliana), 3'ss of exon 5
----atgcctttggttggtgatttaactcttatggtctacttgattgctcacttttgcctttcctttactggaatgatttttattg----atactgttgtttgac-----cagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT
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gtatatgccattattgaataaacgagaagagaaagtggttttatacaatcaaaa--gtcaatactttattagatcgcatgcaactacaatgcattcttaattgacatttacagGGCAAAAGCAAAGCTAGTATATGCTTGTGAGTGGAATCCCCATGCTATTGAAGCTCTTCGACGTAATGTTGAAGCAAATTCTGTTTCTGAGCGTTGTATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacttttgcctttcctttactggaatgatttttattgatactgttgtttgaccagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT
aatgatttttattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgcctttggttggtgatttaactcttatggtctacttgattgctcacttttgcctttcctttactggaatgatttttattgatactgttgtttgaccagTGCCAAGGCAAAACTGGTCTATGCTTGTGAGTGGAATCCCCATGCTGTTGAGGCGCTACAACATAATCTTCTTGCCAATTCTGTGGCTGATCGATGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -tggttgg
- - - - - - - - - - - - cttatgg
- - - - - - - - - - - - - - - - ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaatga