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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgcaaaatgctataatttagtggcatactgttcttcaaaattgtgtttgtaatatagtttctgttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGTGAGAACACATTCGGATTCTGCAAATAGAA

Basic information

species Vitis vinifera
transcript Vv10s0116g01700.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EDO98830 (Chlamydomonas reinhardtii), 3'ss of exon 4
-------gttagtgcaaaatgctataatttagtggcatac--------tgttcttcaaaattgtgtttgtaatatagtttctg--------ttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGTGAGAACACATTCGGATTCTGCAAATAGAA
       |  || ||     ||| |      |  |  | |        |||  ||    |    ||   |       |   ||        |  ||||||| ||  | |||||  | |||||||||||  |||||||||| || || ||||| ||||| |||||||| || |||||||| |||||   | |  |  ||  
cagcagggccagagccgggcgctgtggcaccgccgtgtgcaccgtcgctgtctttgctcaccacgtccttgcgcccctccttgcaacccactcctcacagCCGCGCTCATGTCATCCATCTATGAGGACCACAAGGATGAGGACGGCTTTCTGTACATCACCTACAGCGGCGAGAACACGTTCGGTGCCGGGGAGCAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387182|gb|EC951832.1|EC951832
EST:     TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: gi|110426871|gb|EC993296.1|EC993296
EST:     TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: gi|110415993|gb|EC981941.1|EC981941
EST:     CTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: CTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: gi|110428922|gb|EC995406.1|EC995406
EST:     TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: gi|110693010|gb|EE068869.1|EE068869
EST:     TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
EST: gi|110415258|gb|EC981144.1|EC981144
EST:     TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTG                         CTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC
genomic: TGCTGAGAAAGCCATATTTGTCTTTGTCAAGAACACTCTACCGTCAACTGgttagtgcaa ... gttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtggcatactgttcttcaaaattgtgtttgtaatatagtttctgttgtcacagCTGCATTGATGTCTGCTATCTATGAGGAAAACAAGGATGAAGATGGTTTTCTCTACATGACCTACAGTGGTGAGAACACATTCGGATTCTGCAAATAGAA
                                        tttctgtt  CT-rich tract
                            tttgtaatatagttt  TA-rich tract