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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatactatactctgtaccatgacccttaccttgtggcacaaaaattattttggacatgtgattctgcttcaattttgttactgattttgctaaaatttcgtgtcatcgcagGTTCTCTAGTTAGTTCAAAGCCTGTGAG

Basic information

species Vitis vinifera
transcript Vv10s0116g01480.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351047187|gb|FQ454798.1|FQ454798
EST:     TGGAGGAGGATCAAAAATTCTATGGAATGTTGGTCACTACAAGTATCTGG                         GTTCTCTAGTTAGTTCAAAGCCTGTGAG
genomic: TGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGGgtaattatac ... gtcatcgcagGTTCTCTAGTTAGTTCAAAGCCTGTGAG
EST: gi|71862364|gb|DT011419.1|DT011419
EST:     TGGAGGAGGATCAAAAATTATACGGAGTGTTGGTCACTACAAGTGTCTGG                         GTTCTCTAGTTAGTTCAAAGCCTGTGAG
genomic: TGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGGgtaattatac ... gtcatcgcagGTTCTCTAGTTAGTTCAAAGCCTGTGAG
EST: gi|161716165|gb|FC066491.1|FC066491
EST:     TGGAGGAGGATCAAAAATTCTATGGAATGTTGGTCACTACAAGTATCTGG                         GTTCTCTAGTTAGTTCAAAGCCTGTGAG
genomic: TGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGGgtaattatac ... gtcatcgcagGTTCTCTAGTTAGTTCAAAGCCTGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgattctgcttcaattttgttactgattttgctaaaatttcgtgtcatcgcagGTTCTCTAGTTAGTTCAAAGCCTGTGAG
                               tgctaaa  putative branch site (score: 2)
                           attttgctaaaattt  TA-rich tract