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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcagccccatttcttaattgggtctatggttttcaatcattttccaatcaaaattgtagctgaaacatgaaactaatacaattctggaaattcgtcacagGTTCAGAGGTGTGCCGAGGACAGGTCAATATTGATAACTACCTATGAAGGAACCCACAACCACCCACTCCCTCCGGCTGCAATGGCCATGGCATCAACGA

Basic information

species Vitis vinifera
transcript Vv10s0116g01200.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G01490.1 (Glycine max), 3'ss of exon 5
gtaagat--tcagccccatttcttaattgg---gtctatggttttcaatcattttccaatcaaaattgtagctga-aacatgaaactaataca-----attctggaaattcgt---cacagGTTCAGAGGTGTGCCGAGGACAGGTCAATATTGATAACTACCTATGAAGGAACCCACAACCACCCACTCCCTCCGGCTGCAATGGCCATGGCATCAACGA
|| || |  | |       |  |||||||     | |||   ||  |  | |||  |||| | |||  ||| |   |  || |||||   |       ||  |||   ||  |    | |||||||  | ||||| ||||||||  |||| |||| ||| || || ||||| ||||| ||||| ||||| || || ||||| |||||||||||||| || |
gtgagtttattaaattttctgattaattgatcaatgtattaattgaatgcctttgacaat-ataatattagttatcagaattaaacttgcatgcatgcatattggtggtttatatatatagGTTCAACGTTGTGCGGAGGACAGAACAATTTTGACAACAACGTACGAAGGGACCCATAACCATCCACTGCCACCAGCTGCTATGGCCATGGCATCGACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaaaattgtagctgaaacatgaaactaatacaattctggaaattcgtcacagGTTCAGAGGTGTGCCGAGGACAGGTCAATATTGATAACTACCTATGAAGGAACCCACAACCACCCACTCCCTCCGGCTGCAATGGCCATGGCATCAACGA
                         aactaat  putative branch site (score: 2)
                        aaactaatacaatt  TA-rich tract