Sequence
atgc intronic sequence ATGC exonic sequencegtagtggattttgttgactgatgtttgctttgtattctatactttcttcagaatgatcactcaaggaacattatctactagGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G02490.1 (Glycine max), 3'ss of exon 18
gtagtggattttgttgactgatgtt--tgctttgtattctatactttcttcagaatgat-cactcaaggaacattatctact--agGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
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gtagtatatagtgatatttgtggttcctgacttgctctgttaatgttgtaaaaaatattatatttgataatcgatataaaatgtagGTTTCCCCAGAAGACGTGCTTATCACTCCAGTGCAGTGCAAGGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCGG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G13380.2 (Glycine max), 3'ss of exon 18
gtagtggattttgttgactgatgtttgctt-tgtattctatactttcttcagaatgatcactcaaggaacattatctact--agGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG-----
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gtagtatatagtgatatttg-tgtttcctgatttactctgttaatgttgtaaaaaatatatttgataatctatataaaatgtaggtttccccagAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G13380.1 (Glycine max), 3'ss of exon 18
gtagtggattttgttgactgatgtttgctt-tgtattctatactttcttcagaatgatcactcaaggaacattatctact--agGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
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gtagtatatagtgatatttg-tgtttcctgatttactctgttaatgttgtaaaaaatatatttgataatctatataaaatgtagGTTTCCCCAGAAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G45160.1 (Arabidopsis thaliana), 3'ss of exon 19
-------------gtagtggattttgttgactgatgtttgctttgtattctatactttcttcagaatgatcactcaaggaac-------attatctac-tagGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
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ccaaaattaggacatacttggcatcgtggctcatgggatgaaccac-ttccac-ttgtcgtcaaatgaattaccaatgttattgttattgttatgtgtgcagGTTCCTCCAAATAATATACTACTGACGCCAGTGCAGTGTAAGTCACTGTGGAGACAGTTCAAATCTGAGACCGAGTATACTGTAACCCAAGCTATTTCGG
upper sequence: Vv10s0116g00930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ31796 (Selaginella moellendorffii), 3'ss of exon 15
gtagtggattttgttgactgatgtttgctttgtattctata--ctttcttcagaatgatcactcaaggaacattatctac-tagGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
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----------------------gtaagctgggagatcaaaagcctttcttctaactg------cgag----attacctttgcagGTTCCATCGGAGAAAATGTTGTTGAGTCCAATAGATTGTCGAAATCTATGGAGACAGTTCAAAGCTGAGACTGAGTACACTGTCAGTCAAGCTCTAGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctttgtattctatactttcttcagaatgatcactcaaggaacattatctactagGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
tattctata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtggattttgttgactgatgtttgctttgtattctatactttcttcagaatgatcactcaaggaacattatctactagGTTCCTCCAAACAAAACACTGATTACACCAGTGCAGTGCAAGTCTTTGTGGAGACAGTTCAAAGCAGAGACTGAGTATATTGTCACTCAAGCTATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT