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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttctgacttttggcagGTCGAACAAGCTTGCTCTGCTCTTTCTTCTCTTGCCATGGATGTTCCTGTGGCAATGCAGTTGATGAAATCTGACATCATGCAACCCATTCAAAGAGTGC

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 5
gtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttctgact-tttggcagGTCGAACAAGCTTGCTCTGCTCTTTCTTCTCTTGCCATGGATGTTCCTGTGGCAATGCAGTTGATGAAATCTGACATCATGCAACCCATTCAAAGAGTGC
        |||  ||||     ||||   | ||  || |  ||  ||  |  | | ||           | | ||||| || | | |||  ||||| |||||||| |||||||||||||| || ||||||   |||| | | |||||| ||||  |||||||| | |||||||||||||| |||  || ||| |
--------gtatgttttatgggttta--gacaa--tcacaatttttttgttctgcttctatttggtgggtgtgattgtccttaatattttacagGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTGGCATTGCATCTGATGAAAGCGGACATCATGCAACCAATTGGAACAGTTC

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 4
gtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttctgact-tttggcagGTCGAACAAGCTTGCTCTGCTCTTTCTTCTCTTGCCATGGATGTTCCTGTGGCAATGCAGTTGATGAAATCTGACATCATGCAACCCATTCAAAGAGTGC
            || ||  |    | |  |||   || |  ||  ||| |  | |  |          || | ||||| || | | |||  ||||| |||||||| |||||||||||||| || ||||||   |||| | | || ||| ||||  |||||||| | |||||||||||||| |||  || ||| |
----------gtatgttctatgggtctagata---tcgcaattttttagttcttctgctatttggtggttgtgattgtccttaatattttacagGTTGAACAAGCCTGCTCTGCTCTTTCATCCCTTGCCTCTGATGATTCCGTAGCATTGCATCTGATGAAAGCAGACATCATGCAACCAATTGGAACAGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggttgcttattcttccctcaggcattctattctaattgttctgacttttggcagGTCGAACAAGCTTGCTCTGCTCTTTCTTCTCTTGCCATGGATGTTCCTGTGGCAATGCAGTTGATGAAATCTGACATCATGCAACCCATTCAAAGAGTGC
                                       ttctgac  putative branch site (score: 2)
                                             ctttt  CT-rich tract
                        attctattctaatt  TA-rich tract