Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatcaatgtctttcccctaactttatgttttgaacaaaaaatttcaatttccatatccatgaaaacgttcttatttctgcagATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAACTATTTTGTTAGGTACTGCAAGCATCATCCCGATGGGACTTGGGCAGTTG

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------gtactgatcaatgtctttcccct-----------aactttatgttttgaacaaaaaatttcaatttccatatccatgaaaacgttcttatttctgcagATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAACTATTTTGTTAGGTACTGCAAGCATCATCCCGATGGGACTTGGGCAGTTG
                                                     |  |||   ||  |||| ||||           ||   ||| | ||    |  |  | | ||||  || |    |     | || || | | |  ||||| |  |||| ||||||||||||||||| || ||||| ||| | || |||||||| || |||||||| ||||| || || |||||||  |||||||| |
gtacgcatttttctccccttttatatattttcttctacaccatgacccggtgttgttgacagataactttaccctcgaccaggacaaaaaatatatctttgttagcacctcttaattaacaaagtgttttttgcttttttgtgttt--agATGTCATCTGAGTTCCAAGTCCCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737209|gb|EV241323.1|EV241323
EST:     AAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTG                         ATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAAC
genomic: AAGTCCTCTCAACGGGAGTCGCAGGGAACTACAATGGAGCCTTGCAAGTGgtactgatca ... atttctgcagATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaacaaaaaatttcaatttccatatccatgaaaacgttcttatttctgcagATGACGGCTGAATTCCAAGTCCCTTCACCGCTGGTTCCAACTAGAGAAAACTATTTTGTTAGGTACTGCAAGCATCATCCCGATGGGACTTGGGCAGTTG
                                        ttcttatttct  CT-rich tract
        aaaaaatttcaatttc  TA-rich tract