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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttccttagaccacactagttgaatttatatgttatgtgtcaatttacttcaatgaattgtattgctgaacttgtactataccagGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAGTATAATATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCCATTC

Basic information

species Vitis vinifera
transcript Vv10s0042g01220.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0042g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G40750.1 (Glycine max), 3'ss of exon 6
gtagtttcctt--------agaccacactagttgaatttatatgttatgtgtcaatttacttcaatgaattgtattgctgaacttgtactataccagGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAGTATAATATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCCATTC
|||  ||  ||        |||   |  |     || | |  |  | |     || |||| |  || | |       ||    ||||    ||||||||||||||||| |||||||||||||| ||||| ||||| || ||| |||||||||||||||||||||||||||| ||||||||||| |||||||| || |
gtaagttttttttataaagagatttcttttacacaagtgaattccttttcaataacttacat-gataattctcccccctttttttgtgacttaccagGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCC

upper sequence: Vv10s0042g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G18240.2 (Glycine max), 3'ss of exon 6
gta-gtttccttagaccacactagttgaatttatatgt-tatgtgtcaatttacttcaatga-attgtattgctgaacttgtactataccagGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAGTATAATATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCCATTC
||| |||| |||  |  | | |  ||  |   |  ||  |   | |    | |||| ||||| | | |    |     ||||  | | ||||||||||||||| |||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||||||| |||||||| || |
gtaagttttctttaaagagatttcttctacacaagtgaattcctttttgataacttaaatgacaatttccccccttttttgtgatttgccagGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGCGAATATATTGTGAAGAAGATCCCAATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426879|gb|EC993305.1|EC993305
EST:     AGGAAAATGTAGCCATCAACCAGCATGAAGCAATTCAGAAATTTATTCAG                         GGAACTGTTGCAGATGGTGCACCAGTAGTACCAATTTCTGCGCAGCTGAAG
genomic: AGGAAAATGTAGCCATCAACCAGCATGAAGCAATTCAGAAATTTATTCAGgtagtttcct ... actataccagGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatgtgtcaatttacttcaatgaattgtattgctgaacttgtactataccagGGAACTGTTGCAGATGGTGCACCAGTGGTACCAATTTCTGCGCAGCTGAAGTATAATATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCCATTC
           aatttactt  TA-rich tract