1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaattttggtaagtactagatagaatgaagtgttctgcaattaatttcaatagttataatacatatttggataatccttttgtctactcctgcttgcagTGACAAAAACTATATCAGTGGAGTTTGTACGAAAGAAAGATCCTGTTATATGCCTTTTATTACACCCAGGAACAGTTGACACAGACCTCTCCAGGCCGTT
species | Vitis vinifera |
transcript | Vv10s0003g05770.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTAGGAGGATGGCATTCTTATCGATCTTCAA-GGCTGCACTTAATCAAT TGACAAAAACTATATCAGTGGAGTTTGTEST: gi|110416872|gb|EC982880.1|EC982880
genomic: CTTAGGAGGATGGCATTCTTATCGATCTTCAAAGGCTGCACTTAATCAATgtatgatatc ... ctgcttgcagTGACAAAAACTATATCAGTGGAGTTTGT
EST: CTTAGGAGGATGGCATTCTTATCGATCTTCAAAGGCTGCACTTAATCAAT TGACAAAAACTATATCAGTGGAGTTTGTACGAAAGAAAGATCCTGTTATAT
genomic: CTTAGGAGGATGGCATTCTTATCGATCTTCAAAGGCTGCACTTAATCAATgtatgatatc ... ctgcttgcagTGACAAAAACTATATCAGTGGAGTTTGTACGAAAGAAAGATCCTGTTATAT
tttcaatagttataatacatatttggataatccttttgtctactcctgcttgcagTGACAAAAACTATATCAGTGGAGTTTGTACGAAAGAAAGATCCTGTTATATGCCTTTTATTACACCCAGGAACAGTTGACACAGACCTCTCCAGGCCGTT
tccttttgtctactcc CT-rich tract
ttataatacatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattttggtaagtactagatagaatgaagtgttctgcaattaatttcaatagttataatacatatttggataatccttttgtctactcctgcttgcagTGACAAAAACTATATCAGTGGAGTTTGTACGAAAGAAAGATCCTGTTATATGCCTTTTATTACACCCAGGAACAGTTGACACAGACCTCTCCAGGCCGTT
- - - - - - - - - - - agaatgaa
- - - - - - - - - - - - - - - - - -ctgcaat