Sequence
atgc intronic sequence ATGC exonic sequence...tttattttattttacttatttttaacttgtatacatctttagcatgcatgcatacatataccttaaagtccttggtaaatgaatttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G049088_T02 (Zea mays), 3'ss of exon 4
tttattttattttacttatttttaacttgtatacatctttagcatgcat--gcatacatataccttaaagtccttggtaaatgaatttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT
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----------------------------gtaacgttcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccagGGATATCAAGCCTGATAATTTGTTGCTAGATCGAAGTGGCCACTTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTAGATAGCAGTTGCTTCCCAAAT
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G30640.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------------------tttatt-ttattttacttatttttaacttgtatacatctt-tagcatgcatgcat--acatataccttaaagtccttggtaaatgaa----------tttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT
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gtttgaacaactggcatttgaagcttttcatattgttcttttttccatttttgcatcttacttgacatttactatcactagaatcatatcaagcttccggatttcctacagtgcttgtaaattagctttcagttgatacgtggtgataatttaactctagtttcttcctttgcttttgtagGGATATAAAGCCTGATAATTTATTGATTACTCGAAACGGCCATATCAAGCTTTCAGATTTTGGATTGAGCAAGTCTCTGGAAAGCAAAAATTTTCCAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgcatacatataccttaaagtccttggtaaatgaatttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT
tttgttttccttcac CT-rich tract
taaatgaatttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttattttattttacttatttttaacttgtatacatctttagcatgcatgcatacatataccttaaagtccttggtaaatgaatttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT
- - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa