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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC

Basic information

species Vitis vinifera
transcript Vv10s0003g04670.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 5
--------------gtacttgtc-ctgacttgtttttactctattgtactgcg----ttagttttggtgta--aagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
                | |  |  | || || ||||  || |  || ||   |     | | |||  || |  ||     |   || ||| |  |||||||| || || ||||||||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||||| || ||||| |
gtatttaactgtaaccattcattgcagaattatttt--ctttgctgaacaatgaaaccttgctttattgaactaatcgcattccaa-atcatctcagGTTGCTGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTACTGAGTGTAATCCCCACAGGGAATGGGGGCACGATAGAGC

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 5
----------gtacttgtcctgacttgtttttactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
          ||| |    || | |  ||  |   | ||   ||   |||  || | |    || |   |   | |||| |  |||||||| || || ||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||| || |  |||| |||||||| |||||||| |
gtattatgctgtaatgaagcttattcattgctgaacaatgaaaccttgtt--ttattgaactaattgctttcca-catcatctcagGTTGCCGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTGAGTGTAGTCTCCGCAGGGAATGGGGGCACAATAGAGC

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G13640.1 (Glycine max), 3'ss of exon 5
----------gtacttgtcctgacttgtttttactctattgtac---------tgcgttagttttggtgtaa--agtatgtg---gtaac--atcttta---cagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
          |      |  |   || |||| ||  | ||| ||         ||  ||   |||  | | |  ||| ||||   || ||   | ||||   |||||||| ||||| ||||||||||| |  || |||| ||||||||| |||||| | ||||| |||||| || |||| || ||||||||||| || ||||| |
gtatgttattggctccattttccttttttttcacaatgttgaacaatgaaaaatgtcttttctttactctcattagtttgtgtttgtgactgttgtttatgtcagGTTGCTGAAATTCTCAAAGATCGACAGTCGTGGTATCGTGACTGTCGATGCGTGGATGTGTTGAGTATAGTCCCCACTGGAAATGGGGGCACCATAGAGC

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacttgtcctgacttgtttttactctattgtactg-------cgttagttttg---gtgtaaagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
||| | ||  |  ||| || ||    | ||||  ||       ||  | || |      | ||  ||      ||   || |  |||| || ||||||||||||||||||||||||||||| |||||||| |||||  ||||     ||| ||| || || || |||||||| || || || || |
gtaatggtgttttctttttattttaatcttgtgttgtaagaagcggaaattctacgaaggcaatctaaacttcaaatactgtgtagGTCGCTGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGATGTGTCGAGACTCTGAATGTTATACCCACTGGAAATGGTGGTACTATCGAGC

upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------gtact-tgtcctgacttgtttttactct-attgtactgcgttagttttggtgtaaagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
               |  |  || ||| ||||| ||||   | |||    | || |||| ||| | | ||         ||||  |  | ||||||| ||||| ||||||||||||||||||||| | || || || ||| |  | |||    ||||||| || ||| | ||||| || ||||| || || |
gtaaagagtgcgatttgttacgttctggcttgtgtttataatcattagcttacgctagtcttgatttgaa---------aacaaat--atagGTTGCTGAAATTCTCAAAGATCGTCCATCTTGGCTCCGAGATTGTCGAAGTGTGGATACTCTGAGTGTGATACCTGCTGGAAACGGTGGGACGATCGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctattgtactgcgttagttttggtgtaaagtatgtggtaacatctttacagGTTGCGGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGATGCCTCGATGTATTGAGTGTAATCCCTACAGGAAATGGGGGGACAATAGAAC
                                      tggtaac  putative branch site (score: 2)
                                            catcttt  CT-rich tract
                 ttagtttt  TA-rich tract