1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcatttttggaagatttactatgaacacatgacgaattgcccaaagataatgctttgaaatcttcatttcacaataagctgacctatcccttcatctagGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCTCCAGGAACAGGAAAG
species | Vitis vinifera |
transcript | Vv10s0003g03500.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAA GTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCEST: gi|110732627|gb|EE108077.1|EE108077
genomic: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAAgtaggtcttg ... cttcatctagGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCC
EST: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAA GTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCEST: gi|37189203|gb|CF608552.1|CF608552
genomic: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAAgtaggtcttg ... cttcatctagGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCC
EST: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAA GTACTTTACTGGTCTTCTATCA
genomic: GCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAAgtaggtcttg ... cttcatctagGTACTTTACTGGTCTTCTATCA
agataatgctttgaaatcttcatttcacaataagctgacctatcccttcatctagGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCTCCAGGAACAGGAAAG
agctgac putative branch site (score: 3)
cctatcccttcatct CT-rich tract
tttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttttggaagatttactatgaacacatgacgaattgcccaaagataatgctttgaaatcttcatttcacaataagctgacctatcccttcatctagGTACTTTACTGGTCTTCTATCACCATGGAAAGGTATTCTCCTTTTTGGTCCTCCAGGAACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - tatgaac
- - - - - - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - - - -ttgccca
- - - - - - - - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgacc