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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaaaattgacgttcagccacttgtaagtcatttttgactttcaaaccatctttatactcatgttttttccttttcttgcctaccaccagGATAACCCATCTGACAAGGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTT

Basic information

species Vitis vinifera
transcript Vv10s0003g02670.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 5
-----gttcaaaattgacgttc-agccacttgtaagtcattt--ttgactttcaaaccatctttatactcatgttttttccttttcttgcctaccaccagGATAACCCATCTGACAAGGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTT
      | | || || | |||| ||  | || |   |   ||  |||| |  |    |||  |||| ||| ||  ||||  || |  | | | |||   |||||| ||||| ||||||||| | || || |||||  |||||||||| |||||||||||||| ||||||||||| || || || ||||||||||||||||
gttttttaccaacttaaagttctagtaatttattctttcattgattgaatgccctgacattattattctcttggcttttaattcttctacatccca---gGATAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTT

upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G11630.1 (Glycine max), 3'ss of exon 3
gttcaaaattgacgttcagccacttgtaagtcatttttg-actttcaaaccatctttatactcatgttttttcc-ttttcttgcctaccac----cagGATAACCCATCTGACAAGGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTT
|||    |   || |  ||   ||||||| | ||||||  | |     |  | | | | | |  | || | |    ||||||  || ||||    ||||| || ||||| ||||||||| | || || |||||  |||||||||| |||||||||||||| ||||||||||| || || || ||||||||||||||||
gttttttacaaacttaaagtt-cttgtaatttatttttttattgattgaataccctgacattattattctcttggctttcttttcttccacatcccagGACAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactttcaaaccatctttatactcatgttttttccttttcttgcctaccaccagGATAACCCATCTGACAAGGATGTTAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGATGATCTCCGCCAAATATTTGGGGCTT
 ttttgac  putative branch site (score: 3)
                      ctcatgttttttcctt  putative PPT
             atctttata  TA-rich tract